7QIZ | pdb_00007qiz

Specific features and methylation sites of a plant 80S ribosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
VA [auth OA]SCOP2B SuperfamilyRibosomal protein S7 8107754 3000799 SCOP2B (2022-06-29)
WA [auth PA]SCOP2B SuperfamilyWinged helix DNA-binding domain 8107756 3000034 SCOP2B (2022-06-29)
ZA [auth TA]SCOP2B SuperfamilyS13-like H2TH domain 8107740 3000053 SCOP2B (2022-06-29)
BB [auth VA]SCOP2B SuperfamilyRibosomal protein S10 8107736 3001336 SCOP2B (2022-06-29)
EB [auth YA]SCOP2B SuperfamilyWD40 repeat-like 8107748 3001694 SCOP2B (2022-06-29)
SB [auth DA]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8107746 3000068 SCOP2B (2022-06-29)
BC [auth JA]SCOP2B SuperfamilyRibosomal protein S8 8107728 3000709 SCOP2B (2022-06-29)
AC [auth MA]SCOP2B SuperfamilyRibosomal protein S30e-like 8107722 3002190 SCOP2B (2022-06-29)
XB [auth IA]SCOP2B SuperfamilyTranslational machinery components 8107804 3000571 SCOP2B (2022-06-29)
KB [auth v]SCOP2B SuperfamilyRibosomal S3Ae-like 8107752 3002166 SCOP2B (2022-06-29)
JB [auth u]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8107750 3001397 SCOP2B (2022-06-29)
FB [auth ZA]SCOP2B SuperfamilyWinged helix DNA-binding domain 8107738 3000034 SCOP2B (2022-06-29)
CB [auth WA]SCOP2B SuperfamilyNucleic acid-binding proteins 8107784 3000135 SCOP2B (2022-06-29)
AB [auth UA]SCOP2B SuperfamilyWinged helix DNA-binding domain 8107742 3000034 SCOP2B (2022-06-29)
YA [auth RA]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8107744 3000100 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth D]Ribosomal_L2_1e7qizD2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
A [auth D]Ribosomal_L2_C_2e7qizD1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
G [auth J]Ribosomal_L7Ae_1e7qizJ1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
L [auth O]Ribosomal_L14ee7qizO1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
N [auth Q]Ribosomal_L13e7qizQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
Q [auth T]Ribosomal_L19e_Ne7qizT2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: Ribosomal_L19e_NECOD (1.6)
Q [auth T]Ribosomal_L19e_Ce7qizT1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: Ribosomal_L19e_CECOD (1.6)
R [auth U]Ribosomal_L18Ae7qizU1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
W [auth Z]Ribosomal_L23_3e7qizZ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_3ECOD (1.6)
BA [auth e]Ribosomal_L7Aee7qize1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
IA [auth l]Ribosomal_L37ee7qizl1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
MA [auth p]Ribosomal_L44e7qizp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L44ECOD (1.6)
OA [auth r]Ribosomal_L28ee7qizr1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: Ribosomal_L28eECOD (1.6)
VA [auth OA]Ribosomal_S7_1e7qizOA1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
WA [auth PA]S10_plectine7qizPA1 A: alpha arraysX: HTHH: HTHT: wingedF: S10_plectinECOD (1.6)
ZA [auth TA]Ribosomal_S13e7qizTA1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
BB [auth VA]Ribosomal_S10_1e7qizVA1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)
EB [auth YA]ANAPC4_WD40_1e7qizYA1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_1ECOD (1.6)
SB [auth DA]Ribosomal_S26ee7qizDA1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S26eECOD (1.6)
YB [auth KA]Ribosomal_S24ee7qizKA1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
BC [auth JA]Ribosomal_S8_N_1e7qizJA2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
BC [auth JA]Ribosomal_S8_C_1e7qizJA1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
H [auth K]Ribosomal_L6_2e7qizK1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
H [auth K]Ribosomal_L6e7qizK2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
AC [auth MA]Ribosomal_S30e7qizMA1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
ZB [auth LA]Ribosomal_S27ee7qizLA1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
XB [auth IA]Ribosomal_S11e7qizIA1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
WB [auth HA]Ribosomal_S13_Ne7qizHA1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
WB [auth HA]Ribosomal_S15_2e7qizHA2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
VB [auth GA]S4e7qizGA1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
UB [auth FA]Ribosomal_S6ee7qizFA1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
TB [auth EA]Ribosomal_S5_C_1e7qizEA1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
TB [auth EA]Ribosomal_S5_3e7qizEA2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
TB [auth EA]Ribosomal_S5_2e7qizEA3 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
RB [auth CA]Ribosom_S12_S23e7qizCA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
QB [auth BA]Ribosomal_S21ee7qizBA1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
PB [auth AA]Ribosomal_S17ee7qizAA1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
OB [auth z]Ribosomal_S17_1e7qizz1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
NB [auth y]Ribosomal_S8ee7qizy1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
MB [auth x]Ribosomal_S7e_Ne7qizx1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
MB [auth x]Ribosomal_S7e_C_1e7qizx2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_C_1ECOD (1.6)
LB [auth w]Ribosomal_S4ee7qizw1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
LB [auth w]40S_S4_Ce7qizw3 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
LB [auth w]RS4NTe7qizw2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
KB [auth v]Ribosomal_S3Ae_Ne7qizv1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
KB [auth v]Ribosomal_S3Ae_Ce7qizv2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
JB [auth u]Ribosomal_S2_2e7qizu1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
IB [auth t]Ribosomal_L41e7qizt1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: Ribosomal_L41ECOD (1.6)
F [auth I]Ribosomal_L30_1e7qizI1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
FB [auth ZA]Ribosomal_S25e7qizZA1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)
DB [auth XA]Ribosomal_S14_2e7qizXA1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_2ECOD (1.6)
CB [auth WA]Ribosomal_S28ee7qizWA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
AB [auth UA]Ribosomal_S19ee7qizUA1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
YA [auth RA]Ribosomal_S9e7qizRA1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
XA [auth QA]Ribosomal_S19e7qizQA1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
E [auth H]Ribosomal_L6ee7qizH1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L6eECOD (1.6)
UA [auth NA]Ribosomal_S3_Ce7qizNA1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
UA [auth NA]KH_2_3e7qizNA2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_3ECOD (1.6)
NA [auth q]Ribosomal_L37aee7qizq1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37aeECOD (1.6)
D [auth G]Ribosomal_L5ee7qizG1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L5eECOD (1.6)
LA [auth o]Ribosomal_L40ee7qizo1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L40eECOD (1.6)
KA [auth n]Ribosomal_L39e7qizn1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: Ribosomal_L39ECOD (1.6)
JA [auth m]Ribosomal_L38ee7qizm1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: Ribosomal_L38eECOD (1.6)
GA [auth j]Ribosomal_L29_2e7qizj1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29_2ECOD (1.6)
FA [auth i]Ribosomal_L34ee7qizi1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: Ribosomal_L34eECOD (1.6)
EA [auth h]Ribosomal_L35Aee7qizh1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L35AeECOD (1.6)
DA [auth g]Ribosomal_L32ee7qizg1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
C [auth E]Ribosomal_L3e7qizE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
CA [auth f]Ribosomal_L31ee7qizf1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: Ribosomal_L31eECOD (1.6)
AA [auth d]Ribosomal_L29ee7qizd1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: Ribosomal_L29eECOD (1.6)
Z [auth c]Ribosomal_L18e7qizc1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
Y [auth b]Ribosomal_L27ee7qizb1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L27eECOD (1.6)
X [auth a]Ribosomal_L26e7qiza1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
V [auth Y]Ribosomal_L24ee7qizY1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_L24eECOD (1.6)
U [auth X]Ribosomal_L14e7qizX1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
T [auth W]Ribosomal_L22ee7qizW1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: Ribosomal_L22eECOD (1.6)
B [auth F]Ribosomal_L4e7qizF1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
B [auth F]Ribos_L4_asso_Ce7qizF2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: Ribos_L4_asso_CECOD (1.6)
S [auth V]Ribosomal_L21ee7qizV1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L21eECOD (1.6)
O [auth R]Ribosomal_L22e7qizR1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
M [auth P]Ribosomal_L15ee7qizP1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
K [auth N]Ribosomal_L13ee7qizN1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: Ribosomal_L13eECOD (1.6)
J [auth M]Ribosomal_L5_Ce7qizM1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth D]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
A [auth D]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
G [auth J]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
G [auth J]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
I [auth L]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
I [auth L]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
L [auth O]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e familyBovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. Domain
L [auth O]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
N [auth Q]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
N [auth Q]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
P [auth S]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
Q [auth T]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
Q [auth T]PF01280Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e)Ribosomal protein L19e, N-terminal domainThis domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain
R [auth U]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
R [auth U]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
W [auth Z]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
W [auth Z]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
W [auth Z]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
VA [auth OA]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
WA [auth PA]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. Domain
ZA [auth TA]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
BB [auth VA]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
EB [auth YA]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
YB [auth KA]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
BC [auth JA]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
H [auth K]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
H [auth K]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
XB [auth IA]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
WB [auth HA]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
VB [auth GA]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
VB [auth GA]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
UB [auth FA]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
TB [auth EA]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
TB [auth EA]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
RB [auth CA]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
QB [auth BA]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
F [auth I]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. Domain
F [auth I]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
CB [auth WA]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28eDomain
AB [auth UA]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
YA [auth RA]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
XA [auth QA]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
E [auth H]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeThis entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. Domain
E [auth H]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
UA [auth NA]PF07650KH domain (KH_2)KH domainDomain
UA [auth NA]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
D [auth G]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
D [auth G]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins. Domain
D [auth G]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
V [auth Y]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24eDomain
V [auth Y]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
U [auth X]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
U [auth X]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
T [auth W]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
T [auth W]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain
B [auth F]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
B [auth F]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
B [auth F]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
O [auth R]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
O [auth R]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
M [auth P]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
M [auth P]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
K [auth N]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
K [auth N]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
J [auth M]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
J [auth M]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
J [auth M]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth D]60S ribosomal protein L8
G [auth J]Ribosomal_L7Ae domain-containing protein
I [auth L]60S ribosomal protein L10
L [auth O]Ribosomal_L14e domain-containing protein
N [auth Q]Pectinesterase
P [auth S]Ribosomal_L18e/L15P domain-containing protein
Q [auth T]Ribosomal protein L19
R [auth U]60S ribosomal protein L18a
W [auth Z]Ribosomal_L23eN domain-containing protein
BA [auth e]60S ribosomal protein eL30---
IA [auth l]Ribosomal protein L37
MA [auth p]60S ribosomal protein eL42
OA [auth r]Ribosomal_L28e domain-containing protein
QA [auth 2]25S rRNA---
RA [auth 5]5S rRNA---
VA [auth OA]Ribosomal_S7 domain-containing protein
WA [auth PA]S10_plectin domain-containing protein -
ZA [auth TA]40S ribosomal protein uS13
BB [auth VA]Ribosomal_S10 domain-containing protein
EB [auth YA]Mitogen-activated protein kinase
GB [auth aA]tRNA_1---
SB [auth DA]40S ribosomal protein S26
YB [auth KA]40S ribosomal protein S24
BC [auth JA]40S ribosomal protein S15a-1
H [auth K]60S ribosomal protein uL6
AC [auth MA]40S ribosomal protein S30
ZB [auth LA]40S ribosomal protein S27---
XB [auth IA]Ribosomal protein S14
WB [auth HA]30S ribosomal protein S15, chloroplastic
VB [auth GA]40S body ribosomal protein uS4
UB [auth FA]40S ribosomal protein S6
TB [auth EA]S5 DRBM domain-containing protein
RB [auth CA]40S body ribosomal protein uS12
QB [auth BA]40S ribosomal protein S21
PB [auth AA]40S ribosomal protein S17
OB [auth z]Ribosomal_S17_N domain-containing protein
NB [auth y]40S ribosomal protein S8
MB [auth x]40S ribosomal protein S7
LB [auth w]40S ribosomal protein S4
KB [auth v]40S ribosomal protein S3a
JB [auth u]40S ribosomal protein SA
IB [auth t]60S ribosomal protein L41
HB [auth bA]mRNA---
F [auth I]Thaliana 60S ribosomal protein L7
FB [auth ZA]40S ribosomal protein S25 -
DB [auth XA]40S ribosomal protein uS14
CB [auth WA]40S ribosomal protein eS28
AB [auth UA]40S ribosomal protein eS19
YA [auth RA]40S ribosomal protein uS9
XA [auth QA]40S ribosomal protein uS19
E [auth H]Ribosomal_L6e_N domain-containing protein
UA [auth NA]KH type-2 domain-containing protein
TA [auth S2]18S---
SA [auth 8]5.8S rRNA---
PA [auth s]tRNA---
NA [auth q]60S ribosomal protein eL43
D [auth G]Ribosomal_L18_c domain-containing protein
LA [auth o]Ubiquitin
KA [auth n]60S ribosomal protein eL39
JA [auth m]60S ribosomal protein L38
HA [auth k]60S ribosomal protein L36
GA [auth j]Similar to 60S ribosomal protein L35
FA [auth i]60S ribosomal protein eL34
EA [auth h]60S ribosomal protein eL33
DA [auth g]60S ribosomal protein eL32
C [auth E]Ribosomal protein L3
CA [auth f]60S ribosomal protein eL31
AA [auth d]60S ribosomal protein L29
Z [auth c]Ribosomal_L18e/L15P domain-containing protein
Y [auth b]60S ribosomal protein L27
X [auth a]KOW domain-containing protein
V [auth Y]TRASH domain-containing protein
U [auth X]60S ribosomal protein uL14
T [auth W]60S ribosomal protein eL22
B [auth F]Ribos_L4_asso_C domain-containing protein
S [auth V]60S ribosomal protein eL21
O [auth R]50S ribosomal protein L22, chloroplastic
M [auth P]Ribosomal protein L15
K [auth N]60S ribosomal protein L13
J [auth M]60S ribosomal protein uL5

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth D]IPR023672Large ribosomal subunit protein uL2, archaea/eukaryotaFamily
A [auth D]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
A [auth D]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
A [auth D]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
A [auth D]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
A [auth D]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
A [auth D]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
A [auth D]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
A [auth D]IPR002171Large ribosomal subunit protein uL2Family
G [auth J]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
G [auth J]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
G [auth J]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
G [auth J]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
G [auth J]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
G [auth J]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
I [auth L]IPR001197Large ribosomal subunit protein uL16, eukaryota/archaeaFamily
I [auth L]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
I [auth L]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryota/archaeaConserved Site
I [auth L]IPR016180Large ribosomal subunit protein uL16 domainDomain
I [auth L]IPR047873Large ribosomal subunit protein uL16Family
L [auth O]IPR039660Large ribosomal subunit protein eL14Family
L [auth O]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
L [auth O]IPR002784Large ribosomal subunit protein eL14 domainDomain
L [auth O]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
N [auth Q]IPR012334Pectin lyase foldHomologous Superfamily
N [auth Q]IPR000070Pectinesterase, catalyticDomain
N [auth Q]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
N [auth Q]IPR005822Large ribosomal subunit protein uL13Family
N [auth Q]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
N [auth Q]IPR011050Pectin lyase fold/virulence factorHomologous Superfamily
N [auth Q]IPR033131Pectinesterase, Asp active siteActive Site
N [auth Q]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
P [auth S]IPR021131Large ribosomal subunit protein uL15/eL18Domain
P [auth S]IPR000039Large ribosomal subunit protein eL18Family
P [auth S]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
Q [auth T]IPR039547Large ribosomal subunit protein eL19Family
Q [auth T]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
Q [auth T]IPR057260Ribosomal protein L19e, C-terminal domainDomain
Q [auth T]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
Q [auth T]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
Q [auth T]IPR057259Ribosomal protein L19e, N-terminal domainDomain
Q [auth T]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
Q [auth T]IPR000196Large ribosomal subunit protein eL19 domainDomain
R [auth U]IPR028877Large ribosomal subunit protein eL20Family
R [auth U]IPR023573Large ribosomal subunit protein eL20 domainDomain
R [auth U]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
W [auth Z]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
W [auth Z]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
W [auth Z]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
W [auth Z]IPR019985Large ribosomal subunit protein uL23Family
W [auth Z]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
W [auth Z]IPR013025Large ribosomal subunit protein uL23-likeFamily
IA [auth l]IPR001569Large ribosomal subunit protein eL37Family
IA [auth l]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
IA [auth l]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IA [auth l]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
MA [auth p]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
MA [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
MA [auth p]IPR000552Large ribosomal subunit protein eL42Family
OA [auth r]IPR029004Ribosomal eL28/Mak16Domain
OA [auth r]IPR002672Large ribosomal subunit protein eL28Family
VA [auth OA]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
VA [auth OA]IPR000235Small ribosomal subunit protein uS7Family
VA [auth OA]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
VA [auth OA]IPR023798Small ribosomal subunit protein uS7 domainDomain
VA [auth OA]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
WA [auth PA]IPR037447Small ribosomal subunit protein eS10Family
WA [auth PA]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
WA [auth PA]IPR005326Plectin/eS10, N-terminalDomain
ZA [auth TA]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
ZA [auth TA]IPR001892Small ribosomal subunit protein uS13Family
ZA [auth TA]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
ZA [auth TA]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
BB [auth VA]IPR001848Small ribosomal subunit protein uS10Family
BB [auth VA]IPR027486Small ribosomal subunit protein uS10 domainDomain
BB [auth VA]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
BB [auth VA]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
BB [auth VA]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
EB [auth YA]IPR003527Mitogen-activated protein (MAP) kinase, conserved siteConserved Site
EB [auth YA]IPR017441Protein kinase, ATP binding siteBinding Site
EB [auth YA]IPR019775WD40 repeat, conserved siteConserved Site
EB [auth YA]IPR043891SPARK domainDomain
EB [auth YA]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
EB [auth YA]IPR000719Protein kinase domainDomain
EB [auth YA]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
EB [auth YA]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
EB [auth YA]IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
EB [auth YA]IPR045223Small ribosomal subunit protein RACK1-likeFamily
EB [auth YA]IPR001680WD40 repeatRepeat
SB [auth DA]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
SB [auth DA]IPR000892Small ribosomal subunit protein eS26Family
SB [auth DA]IPR047864Ribosomal protein eS26, conserved siteConserved Site
YB [auth KA]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
YB [auth KA]IPR001976Small ribosomal subunit protein eS24Family
YB [auth KA]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
YB [auth KA]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
BC [auth JA]IPR000630Small ribosomal subunit protein uS8Family
BC [auth JA]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
BC [auth JA]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
H [auth K]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
H [auth K]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
H [auth K]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
H [auth K]IPR000702Large ribosomal subunit protein uL6-likeFamily
AC [auth MA]IPR006846Small ribosomal subunit protein eS30Family
XB [auth IA]IPR001971Small ribosomal subunit protein uS11Family
XB [auth IA]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
XB [auth IA]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
WB [auth HA]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
WB [auth HA]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
WB [auth HA]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
WB [auth HA]IPR000589Small ribosomal subunit protein uS15Family
VB [auth GA]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
VB [auth GA]IPR002942RNA-binding S4 domainDomain
VB [auth GA]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
VB [auth GA]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
VB [auth GA]IPR022801Small ribosomal subunit protein uS4Family
VB [auth GA]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
UB [auth FA]IPR014401Small ribosomal subunit protein eS6-likeFamily
UB [auth FA]IPR001377Small ribosomal subunit protein eS6Family
UB [auth FA]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
TB [auth EA]IPR005711Small ribosomal subunit protein uS5, eukaryota_archaeaFamily
TB [auth EA]IPR000851Small ribosomal subunit protein uS5Family
TB [auth EA]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
TB [auth EA]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
TB [auth EA]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
TB [auth EA]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
TB [auth EA]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
RB [auth CA]IPR006032Small ribosomal subunit protein uS12Family
RB [auth CA]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
RB [auth CA]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
QB [auth BA]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
QB [auth BA]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
QB [auth BA]IPR001931Small ribosomal subunit protein eS21Family
PB [auth AA]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
PB [auth AA]IPR001210Small ribosomal subunit protein eS17Family
PB [auth AA]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
OB [auth z]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
OB [auth z]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
OB [auth z]IPR000266Small ribosomal subunit protein uS17Family
OB [auth z]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
OB [auth z]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
NB [auth y]IPR001047Small ribosomal subunit protein eS8Family
NB [auth y]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
NB [auth y]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
NB [auth y]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
MB [auth x]IPR000554Small ribosomal subunit protein eS7Family
MB [auth x]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
LB [auth w]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
LB [auth w]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
LB [auth w]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
LB [auth w]IPR013845Small ribosomal subunit protein eS4, central regionDomain
LB [auth w]IPR000876Small ribosomal subunit protein eS4Family
LB [auth w]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
LB [auth w]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
LB [auth w]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
LB [auth w]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
LB [auth w]IPR005824KOWDomain
KB [auth v]IPR001593Small ribosomal subunit protein eS1Family
KB [auth v]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
KB [auth v]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
JB [auth u]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
JB [auth u]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
JB [auth u]IPR001865Small ribosomal subunit protein uS2Family
JB [auth u]IPR005707Small ribosomal subunit protein uS2, eukaryota/archaeaFamily
JB [auth u]IPR027498Small ribosomal subunit protein uS2, eukaryotaFamily
IB [auth t]IPR007836Large ribosomal subunit protein eS32Family
F [auth I]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
F [auth I]IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
F [auth I]IPR039699Large ribosomal subunit protein uL30Family
F [auth I]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
F [auth I]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
F [auth I]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
F [auth I]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
FB [auth ZA]IPR004977Small ribosomal subunit protein eS25Family
DB [auth XA]IPR001209Small ribosomal subunit protein uS14Family
DB [auth XA]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
DB [auth XA]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
CB [auth WA]IPR028626Ribosomal protein eS28 conserved siteConserved Site
CB [auth WA]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
CB [auth WA]IPR000289Small ribosomal subunit protein eS28Family
AB [auth UA]IPR001266Small ribosomal subunit protein eS19Family
AB [auth UA]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
AB [auth UA]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
AB [auth UA]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
YA [auth RA]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
YA [auth RA]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
YA [auth RA]IPR000754Small ribosomal subunit protein uS9Family
YA [auth RA]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
XA [auth QA]IPR002222Small ribosomal subunit protein uS19Family
XA [auth QA]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
XA [auth QA]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
XA [auth QA]IPR005713Small ribosomal subunit protein uS19, eukaryota/archaeaFamily
E [auth H]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
E [auth H]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth H]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
E [auth H]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
E [auth H]IPR000915Large ribosomal subunit protein eL6Family
UA [auth NA]IPR005703Small ribosomal subunit protein uS3, eukaryota/archaealFamily
UA [auth NA]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
UA [auth NA]IPR057258Small ribosomal subunit protein uS3Family
UA [auth NA]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
UA [auth NA]IPR004044K Homology domain, type 2Domain
UA [auth NA]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
UA [auth NA]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
UA [auth NA]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
NA [auth q]IPR002674Large ribosomal subunit protein eL43Family
NA [auth q]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
NA [auth q]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
D [auth G]IPR057268Large ribosomal subunit protein uL18Family
D [auth G]IPR005485Large ribosomal subunit protein uL18, eukaryota/archaeaFamily
D [auth G]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
LA [auth o]IPR019954Ubiquitin conserved siteConserved Site
LA [auth o]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
LA [auth o]IPR000626Ubiquitin-like domainDomain
LA [auth o]IPR019956Ubiquitin domainDomain
LA [auth o]IPR050158Ubiquitin and ubiquitin-likeFamily
LA [auth o]IPR001975Large ribosomal subunit protein eL40 domainDomain
LA [auth o]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
LA [auth o]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
KA [auth n]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
KA [auth n]IPR000077Large ribosomal subunit protein eL39Family
KA [auth n]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
JA [auth m]IPR002675Large ribosomal subunit protein eL38Family
JA [auth m]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
HA [auth k]IPR000509Large ribosomal subunit protein eL36Family
HA [auth k]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
GA [auth j]IPR001854Large ribosomal subunit protein uL29Family
GA [auth j]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
GA [auth j]IPR045059Large ribosomal subunit protein uL29, eukaryotaFamily
FA [auth i]IPR008195Large ribosomal subunit protein eL34Family
FA [auth i]IPR038562Large ribosomal subunit protein eL34, C-terminal domain superfamilyHomologous Superfamily
FA [auth i]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
EA [auth h]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
EA [auth h]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
EA [auth h]IPR001780Large ribosomal subunit protein eL33Family
EA [auth h]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
DA [auth g]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
DA [auth g]IPR001515Large ribosomal subunit protein eL32Family
DA [auth g]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
C [auth E]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
C [auth E]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
C [auth E]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
C [auth E]IPR000597Large ribosomal subunit protein uL3Family
C [auth E]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
CA [auth f]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
CA [auth f]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
CA [auth f]IPR000054Large ribosomal subunit protein eL31Family
AA [auth d]IPR002673Large ribosomal subunit protein eL29Family
Z [auth c]IPR021131Large ribosomal subunit protein uL15/eL18Domain
Z [auth c]IPR030878Large ribosomal subunit protein uL15Family
Z [auth c]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
Z [auth c]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
Y [auth b]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
Y [auth b]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
Y [auth b]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Y [auth b]IPR001141Large ribosomal subunit protein eL27Family
Y [auth b]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
X [auth a]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
X [auth a]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
X [auth a]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth a]IPR005824KOWDomain
X [auth a]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth a]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
V [auth Y]IPR011017TRASH domainDomain
V [auth Y]IPR056366Large ribosomal subunit protein eL24Family
V [auth Y]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
V [auth Y]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
V [auth Y]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
U [auth X]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
U [auth X]IPR000218Large ribosomal subunit protein uL14Family
U [auth X]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
T [auth W]IPR002671Large ribosomal subunit protein eL22Family
T [auth W]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
B [auth F]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
B [auth F]IPR002136Large ribosomal subunit protein uL4Family
B [auth F]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
B [auth F]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
B [auth F]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
S [auth V]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
S [auth V]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
S [auth V]IPR001147Large ribosomal subunit protein eL21Family
S [auth V]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
O [auth R]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
O [auth R]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
O [auth R]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
O [auth R]IPR001063Large ribosomal subunit protein uL22Family
M [auth P]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
M [auth P]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
M [auth P]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
M [auth P]IPR000439Large ribosomal subunit protein eL15Family
K [auth N]IPR001380Large ribosomal subunit protein eL13Family
K [auth N]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
J [auth M]IPR057266Large ribosomal subunit protein uL5, eukaryota/archaeaFamily
J [auth M]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
J [auth M]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
J [auth M]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
J [auth M]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
J [auth M]IPR002132Large ribosomal subunit protein uL5Family

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
OA [auth r]THC Parent Component: THR

QA [auth 2]1MA Parent Component: A

QA [auth 2]5MC Parent Component: C

QA [auth 2]A2M Parent Component: A

QA [auth 2]OMC Parent Component: C

QA [auth 2]OMG Parent Component: G

QA [auth 2]OMU Parent Component: U

QA [auth 2]PSU Parent Component: U

QA [auth 2]UR3 Parent Component: U

XB [auth IA]IAS
TA [auth S2]4AC
TA [auth S2]6MZ Parent Component: A

TA [auth S2]7MG Parent Component: G

TA [auth S2]A2M Parent Component: A

TA [auth S2]I2T
TA [auth S2]MA6 Parent Component: A

TA [auth S2]OMC Parent Component: C

TA [auth S2]OMG Parent Component: G

TA [auth S2]OMU Parent Component: U

TA [auth S2]PSU Parent Component: U

TA [auth S2]UY1
SA [auth 8]A2M Parent Component: A

SA [auth 8]OMG Parent Component: G

SA [auth 8]PSU Parent Component: U

C [auth E]HIC Parent Component: HIS

RESIDAA0317

PSI-MOD :  1'-methyl-L-histidine MOD:00322