7QO6 | pdb_00007qo6

26S proteasome Rpt1-RK -Ubp6-UbVS complex in the s2 state


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth a]SCOP2 FamilyProteasome subunits 8106857 4002254 SCOP2 (2022-06-29)
A [auth a]SCOP2 SuperfamilyClass II glutamine amidotransferases 8106858 3000131 SCOP2 (2022-06-29)
Z [auth 5]SCOP2 FamilyProteasome subunits 8106867 4002254 SCOP2 (2022-06-29)
Z [auth 5]SCOP2 SuperfamilyClass II glutamine amidotransferases 8106868 3000131 SCOP2 (2022-06-29)
AA [auth 6]SCOP2 FamilyProteasome subunits 8106859 4002254 SCOP2 (2022-06-29)
AA [auth 6]SCOP2 SuperfamilyClass II glutamine amidotransferases 8106860 3000131 SCOP2 (2022-06-29)
FA [auth X]SCOP2 FamilyPRU domain-like 8106849 4005018 SCOP2 (2022-06-29)
FA [auth X]SCOP2 SuperfamilyPH domain-like 8106850 3000134 SCOP2 (2022-06-29)
GA [auth Y]SCOP2B SuperfamilyDSS1/SEM1 protein family 8053395 3002183 SCOP2B (2022-06-29)
B [auth b]SCOP2 FamilyProteasome subunits 8106873 4002254 SCOP2 (2022-06-29)
B [auth b]SCOP2 SuperfamilyClass II glutamine amidotransferases 8106874 3000131 SCOP2 (2022-06-29)
NA [auth U]SCOP2B SuperfamilyJAB1/MPN domain-like 8053272 3001105 SCOP2B (2022-06-29)
NA [auth U]SCOP2B SuperfamilyEIF3 subunit F C-terminal domain-like 8053273 3002167 SCOP2B (2022-06-29)
C [auth c]SCOP2 FamilyProteasome subunits 8106851 4002254 SCOP2 (2022-06-29)
C [auth c]SCOP2 SuperfamilyClass II glutamine amidotransferases 8106852 3000131 SCOP2 (2022-06-29)
VA [auth 8]SCOP2 FamilyUSP domain-like 8106855 4003158 SCOP2 (2022-06-29)
VA [auth 8]SCOP2 SuperfamilyCysteine proteinases 8106856 3001808 SCOP2 (2022-06-29)
WA [auth 9]SCOP2B SuperfamilyUbiquitin-like 8104287 3000157 SCOP2B (2022-06-29)
R [auth D]SCOP2 FamilyProteasome subunits 8106861 4002254 SCOP2 (2022-06-29)
R [auth D]SCOP2 SuperfamilyClass II glutamine amidotransferases 8106862 3000131 SCOP2 (2022-06-29)
E [auth e]SCOP2 FamilyProteasome subunits 8106853 4002254 SCOP2 (2022-06-29)
E [auth e]SCOP2 SuperfamilyClass II glutamine amidotransferases 8106854 3000131 SCOP2 (2022-06-29)
F [auth f]SCOP2 FamilyProteasome subunits 8106847 4002254 SCOP2 (2022-06-29)
F [auth f]SCOP2 SuperfamilyClass II glutamine amidotransferases 8106848 3000131 SCOP2 (2022-06-29)
G [auth g]SCOP2 FamilyProteasome subunits 8106865 4002254 SCOP2 (2022-06-29)
G [auth g]SCOP2 SuperfamilyClass II glutamine amidotransferases 8106866 3000131 SCOP2 (2022-06-29)
H [auth h]SCOP2B SuperfamilyClass II glutamine amidotransferases 8036787 3000131 SCOP2B (2022-06-29)
V [auth 1]SCOP2B SuperfamilyClass II glutamine amidotransferases 8036787 3000131 SCOP2B (2022-06-29)
W [auth 2]SCOP2 FamilyProteasome subunits 8106863 4002254 SCOP2 (2022-06-29)
W [auth 2]SCOP2 SuperfamilyClass II glutamine amidotransferases 8106864 3000131 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth a]Proteasomee7qo6a1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
O [auth A]Proteasomee7qo6A1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
J [auth j]Proteasomee7qo6j1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
X [auth 3]Proteasomee7qo631 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
K [auth k]Proteasomee7qo6k1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
Y [auth 4]Proteasomee7qo641 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
L [auth l]Proteasomee7qo6l1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
Z [auth 5]Proteasomee7qo651 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
AA [auth 6]Proteasomee7qo661 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
M [auth m]Proteasomee7qo6m1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
BA [auth 7]Proteasomee7qo671 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
N [auth n]Proteasomee7qo6n1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
CA [auth W]VWAe7qo6W1 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: vWA-likeF: VWAECOD (1.6)
DA [auth V]JABe7qo6V1 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: JABECOD (1.6)
DA [auth V]F_UNCLASSIFIEDe7qo6V2 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
EA [auth T]CSN8_PSD8_EIF3K_C_2e7qo6T1 A: alpha arraysX: HTHH: HTHT: wingedF: CSN8_PSD8_EIF3K_C_2ECOD (1.6)
EA [auth T]SAC3_GANP_1ste7qo6T2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: SAC3_GANP_1stECOD (1.6)
FA [auth X]Proteasom_Rpn13e7qo6X1 A: beta barrelsX: PH domain-likeH: PH domain-like (From Topology)T: PH domain-likeF: Proteasom_Rpn13ECOD (1.6)
B [auth b]Proteasomee7qo6b1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
P [auth B]Proteasomee7qo6B1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
HA [auth Z]KOG2005_1ste7qo6Z1 A: alpha superhelicesX: Repetitive alpha hairpinsH: 26S proteasome subunit Rpn2 N-terminal domain (From Topology)T: 26S proteasome subunit Rpn2 N-terminal domainF: KOG2005_1stECOD (1.6)
HA [auth Z]KOG1858_2nde7qo6Z2 A: alpha superhelicesX: Repetitive alpha hairpinsH: Proteasome/cyclosome (PC) repeat (From Topology)T: Proteasome/cyclosome (PC) repeatF: KOG1858_2ndECOD (1.6)
IA [auth N]KOG2062_2nde7qo6N1 A: beta sandwichesX: 26S proteasome subunit Rpn2 C-terminal domain (From Topology)H: 26S proteasome subunit Rpn2 C-terminal domain (From Topology)T: 26S proteasome subunit Rpn2 C-terminal domainF: KOG2062_2ndECOD (1.6)
IA [auth N]KOG2062_1ste7qo6N2 A: alpha superhelicesX: Repetitive alpha hairpinsH: 26S proteasome subunit Rpn2 N-terminal domain (From Topology)T: 26S proteasome subunit Rpn2 N-terminal domainF: KOG2062_1stECOD (1.6)
IA [auth N]HEAT_2_3e7qo6N3 A: alpha superhelicesX: Repetitive alpha hairpinsH: Proteasome/cyclosome (PC) repeat (From Topology)T: Proteasome/cyclosome (PC) repeatF: HEAT_2_3ECOD (1.6)
JA [auth S]PCIe7qo6S2 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
JA [auth S]KOG2581e7qo6S1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2581ECOD (1.6)
JA [auth S]Rpn3_Ce7qo6S3 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN3 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN3 C-terminal helixF: Rpn3_CECOD (1.6)
KA [auth P]PCIe7qo6P3 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
KA [auth P]RPN7_1e7qo6P2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RPN7_1ECOD (1.6)
KA [auth P]KOG1498e7qo6P1 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN5 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN5 C-terminal helixF: KOG1498ECOD (1.6)
LA [auth Q]PCIe7qo6Q3 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
LA [auth Q]KOG1463e7qo6Q1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG1463ECOD (1.6)
LA [auth Q]RPN6_likee7qo6Q2 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN6 C-termial helix (From Topology)T: 26S proteasome regulatory subunit RPN6 C-termial helixF: RPN6_likeECOD (1.6)
MA [auth R]PCI_2e7qo6R3 A: alpha arraysX: HTHH: HTHT: wingedF: PCI_2ECOD (1.6)
MA [auth R]RPN7e7qo6R1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RPN7ECOD (1.6)
MA [auth R]KOG0687e7qo6R2 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN7 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN7 C-terminal helixF: KOG0687ECOD (1.6)
NA [auth U]JABe7qo6U2 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: JABECOD (1.6)
NA [auth U]MitMem_rege7qo6U1 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: MitMem_regECOD (1.6)
OA [auth O]PCIe7qo6O1 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
OA [auth O]KOG2908_Ne7qo6O2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2908_NECOD (1.6)
OA [auth O]KOG2908_likee7qo6O3 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN9 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN9 C-terminal helixF: KOG2908_likeECOD (1.6)
QA [auth I]26Sp45e7qo6I3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: 26Sp45ECOD (1.6)
QA [auth I]PRK03992e7qo6I2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PRK03992ECOD (1.6)
QA [auth I]Sigma54_activate7qo6I1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
C [auth c]Proteasomee7qo6c1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
Q [auth C]Proteasomee7qo6C1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
RA [auth K]26Sp45e7qo6K1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: 26Sp45ECOD (1.6)
RA [auth K]PRK03992e7qo6K2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PRK03992ECOD (1.6)
RA [auth K]Sigma54_activate7qo6K3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
SA [auth L]26Sp45e7qo6L1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: 26Sp45ECOD (1.6)
SA [auth L]PRK03992e7qo6L2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PRK03992ECOD (1.6)
SA [auth L]Sigma54_activate7qo6L3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
VA [auth 8]UCHe7qo681 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: UCHECOD (1.6)
WA [auth 9]ubiquitin_1e7qo691 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
D [auth d]Proteasomee7qo6d1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
R [auth D]Proteasomee7qo6D1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
E [auth e]Proteasomee7qo6e1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
S [auth E]Proteasomee7qo6E1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
F [auth f]Proteasomee7qo6f1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
T [auth F]Proteasomee7qo6F1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
G [auth g]Proteasomee7qo6g1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
U [auth G]Proteasomee7qo6G1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
H [auth h]Proteasomee7qo6h1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
V [auth 1]Proteasomee7qo611 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
I [auth i]Proteasomee7qo6i1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
W [auth 2]Proteasomee7qo621 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
BA [auth 7],
N [auth n]
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
GA [auth Y]PF05160DSS1/SEM1 family (DSS1_SEM1)DSS1/SEM1 family- Family
HA [auth Z]PF17781RPN1 N-terminal domain (RPN1_RPN2_N)RPN1 N-terminal domain- Repeat
HA [auth Z]PF01851Proteasome/cyclosome repeat (PC_rep)Proteasome/cyclosome repeat- Repeat
HA [auth Z]PF1805126S proteasome non-ATPase regulatory subunit RPN1 C-terminal (RPN1_C)26S proteasome non-ATPase regulatory subunit RPN1 C-terminalThis is the C-terminal domain found in RPN1 proteins (26S proteasome non-ATPase regulatory subunit 2). The 26S proteasome holocomplex consists of a 28-subunit barrel-shaped core particle (CP) in the center capped at the top and bottom by 19-subunit ...This is the C-terminal domain found in RPN1 proteins (26S proteasome non-ATPase regulatory subunit 2). The 26S proteasome holocomplex consists of a 28-subunit barrel-shaped core particle (CP) in the center capped at the top and bottom by 19-subunit regulatory particles (RPs). The CP forms the catalytic chamber and the RP is formed from two subcomplexes known as the lid and the base [1]. The lid comprises nine Rpn subunits in yeast (Rpn3/5/6/7/8/9/11/12/15) and the base comprises three Rpn subunits (Rpn1/2/13) and six ATPases (Rpt1-6) [2].
Domain
IA [auth N]PF13646HEAT repeats (HEAT_2)HEAT repeats- Repeat
IA [auth N]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
IA [auth N]PF1800426S proteasome regulatory subunit RPN2 C-terminal domain (RPN2_C)26S proteasome regulatory subunit RPN2 C-terminal domainThis is the C-terminal domain found in S. cerevisiae Rpn2 (26S proteasome regulatory subunit RPN2) as well as other eukaryotic species. A study revealed that the C-terminal 52 residues of the Rpn2 C-terminal domain are responsible for mediating inter ...This is the C-terminal domain found in S. cerevisiae Rpn2 (26S proteasome regulatory subunit RPN2) as well as other eukaryotic species. A study revealed that the C-terminal 52 residues of the Rpn2 C-terminal domain are responsible for mediating interactions with the ubiquitin-binding subunit Rpn13. Futhermore, the extreme C-terminal 20 or 21 residues of Rpn2 (926-945 or 925-945) of S. cerevisiae, were shown to be equally effective at binding Rpn13. Multiple sequence alignments indicate that Rpn2 orthologs are highly conserved in this C-terminal region and share characteristic acidic, aromatic, and proline residues, suggesting a common function. In the structure of Rpn2 from S. cerevisiae , this region is exposed and disordered, and is thus accessible for associating with Rpn13. The Rpn2 binding surface of human Rpn13 has been mapped by nuclear magnetic resonance titration to one surface of its Pru domain [1].
Domain
IA [auth N]PF2150526S proteasome subunit RPN2, N-terminal domain (RPN2_N)26S proteasome subunit RPN2, N-terminal domain- Repeat
IA [auth N]PF01851Proteasome/cyclosome repeat (PC_rep)Proteasome/cyclosome repeat- Repeat
NA [auth U]PF13012Maintenance of mitochondrial structure and function (MitMem_reg)Maintenance of mitochondrial structure and function- Family
NA [auth U]PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin proteaseProteins with this domain are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This domain is known as the MPN domain [3] and PAD-1-like domain [4], JABP1 domain [5] or J ...Proteins with this domain are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This domain is known as the MPN domain [3] and PAD-1-like domain [4], JABP1 domain [5] or JAMM domain [7]. These are metalloenzymes that function as the ubiquitin isopeptidase/ deubiquitinase in the ubiquitin-based signalling and protein turnover pathways in eukaryotes [7]. Versions of the domain in prokaryotic cognates of the ubiquitin-modification pathway are shown to have a similar role, and the archaeal protein from Haloferax volcanii is found to cleave ubiquitin-like small archaeal modifier proteins (SAMP1/2) from protein conjugates [8,9].
Domain
OA [auth O]PF18261Rpn9 C-terminal helix (Rpn9_C)Rpn9 C-terminal helix- Family
OA [auth O]PF22037PSD13 N-terminal repeats (PSD13_N)PSD13 N-terminal repeats- Repeat
OA [auth O]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
WA [auth 9]PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth a],
O [auth A]
BJ4_G0020160.mRNA.1.CDS.1---
J [auth j],
X [auth 3]
Proteasome endopeptidase complex---
K [auth k],
Y [auth 4]
Proteasome subunit beta---
L [auth l],
Z [auth 5]
Proteasome subunit beta type-5---
AA [auth 6],
M [auth m]
HLJ1_G0013750.mRNA.1.CDS.1---
BA [auth 7],
N [auth n]
Proteasome subunit beta type-7-
CA [auth W]26S proteasome regulatory subunit RPN10---
DA [auth V]26S proteasome regulatory subunit RPN11---
EA [auth T]EM14S01-3B_G0050020.mRNA.1.CDS.1---
FA [auth X]HLJ1_G0030700.mRNA.1.CDS.1---
GA [auth Y]26S proteasome complex subunit SEM1
B [auth b],
P [auth B]
HLJ1_G0039880.mRNA.1.CDS.1---
HA [auth Z]26S proteasome regulatory subunit RPN1
IA [auth N]26S proteasome regulatory subunit RPN2
JA [auth S]26S proteasome regulatory subunit RPN3---
KA [auth P]26S proteasome regulatory subunit RPN5---
LA [auth Q]26S proteasome regulatory subunit RPN6---
MA [auth R]26S proteasome regulatory subunit RPN7---
NA [auth U]26S proteasome regulatory subunit RPN8
OA [auth O]26S proteasome regulatory subunit RPN9
PA [auth H]26S proteasome regulatory subunit 7 homolog---
QA [auth I]26S proteasome regulatory subunit 4 homolog---
C [auth c],
Q [auth C]
BJ4_G0021480.mRNA.1.CDS.1---
RA [auth K]26S proteasome regulatory subunit 6B homolog---
SA [auth L]26S proteasome subunit RPT4---
TA [auth M]26S proteasome regulatory subunit 6A---
UA [auth J]26S proteasome regulatory subunit 8 homolog---
VA [auth 8]Ubiquitin carboxyl-terminal hydrolase---
WA [auth 9]Polyubiquitin-B- - -
D [auth d],
R [auth D]
HLJ1_G0048980.mRNA.1.CDS.1---
E [auth e],
S [auth E]
EM14S01-3B_G0035190.mRNA.1.CDS.1---
F [auth f],
T [auth F]
BJ4_G0043800.mRNA.1.CDS.1---
G [auth g],
U [auth G]
Probable proteasome subunit alpha type-7---
H [auth h],
V [auth 1]
Proteasome subunit beta type-1
I [auth i],
W [auth 2]
Proteasome endopeptidase complex---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
BA [auth 7],
N [auth n]
IPR016050Proteasome beta-type subunit, conserved siteConserved Site
BA [auth 7],
N [auth n]
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
BA [auth 7],
N [auth n]
IPR023333Proteasome B-type subunitFamily
BA [auth 7],
N [auth n]
IPR016295Proteasome subunit beta 4Family
BA [auth 7],
N [auth n]
IPR001353Proteasome, subunit alpha/betaFamily
GA [auth Y]IPR007834DSS1/SEM1Family
HA [auth Z]IPR04143326S proteasome non-ATPase regulatory subunit RPN1, C-terminalDomain
HA [auth Z]IPR016024Armadillo-type foldHomologous Superfamily
HA [auth Z]IPR002015Proteasome/cyclosome repeatRepeat
HA [auth Z]IPR01664326S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunitFamily
HA [auth Z]IPR011989Armadillo-like helicalHomologous Superfamily
HA [auth Z]IPR040892RPN1, N-terminalDomain
IA [auth N]IPR04062326S proteasome regulatory subunit RPN2, C-terminalDomain
IA [auth N]IPR016024Armadillo-type foldHomologous Superfamily
IA [auth N]IPR002015Proteasome/cyclosome repeatRepeat
IA [auth N]IPR011989Armadillo-like helicalHomologous Superfamily
IA [auth N]IPR04857026S proteasome non-ATPase regulatory subunit 1/RPN2, N-terminal domainDomain
IA [auth N]IPR01664226S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunitFamily
NA [auth U]IPR024969EIF3F/CSN6-like, C-terminalDomain
NA [auth U]IPR037518MPN domainDomain
NA [auth U]IPR03385826S Proteasome non-ATPase regulatory subunit 7/8Family
NA [auth U]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
OA [auth O]IPR054179PSD13, N-terminalDomain
OA [auth O]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
OA [auth O]IPR03529826S Proteasome non-ATPase regulatory subunit 13Family
OA [auth O]IPR000717Proteasome component (PCI) domainDomain
OA [auth O]IPR040798Rpn9, C-terminal helixDomain
WA [auth 9]IPR019956Ubiquitin domainDomain
WA [auth 9]IPR019954Ubiquitin conserved siteConserved Site
WA [auth 9]IPR050158Ubiquitin and ubiquitin-likeFamily
WA [auth 9]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
WA [auth 9]IPR000626Ubiquitin-like domainDomain
H [auth h],
V [auth 1]
IPR016050Proteasome beta-type subunit, conserved siteConserved Site
H [auth h],
V [auth 1]
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
H [auth h],
V [auth 1]
IPR023333Proteasome B-type subunitFamily
H [auth h],
V [auth 1]
IPR001353Proteasome, subunit alpha/betaFamily
H [auth h],
V [auth 1]
IPR000243Peptidase T1A, proteasome beta-subunitFamily