7T8S | pdb_00007t8s

Light Harvesting complex phycoerythrin PE 566, from the cryptophyte Cryptomonas pyrenoidifera

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Phycoerythr_ab	e7t8sF1	A: extended segments	X: Phycoerythrin 545 alpha-subunits (From Topology)	H: Phycoerythrin 545 alpha-subunits (From Topology)	T: Phycoerythrin 545 alpha-subunits	F: Phycoerythr_ab	ECOD (1.6)
N	Phycoerythr_ab	e7t8sN1	A: extended segments	X: Phycoerythrin 545 alpha-subunits (From Topology)	H: Phycoerythrin 545 alpha-subunits (From Topology)	T: Phycoerythrin 545 alpha-subunits	F: Phycoerythr_ab	ECOD (1.6)
J	Phycoerythr_ab	e7t8sJ1	A: extended segments	X: Phycoerythrin 545 alpha-subunits (From Topology)	H: Phycoerythrin 545 alpha-subunits (From Topology)	T: Phycoerythrin 545 alpha-subunits	F: Phycoerythr_ab	ECOD (1.6)
B	Phycoerythr_ab	e7t8sB1	A: extended segments	X: Phycoerythrin 545 alpha-subunits (From Topology)	H: Phycoerythrin 545 alpha-subunits (From Topology)	T: Phycoerythrin 545 alpha-subunits	F: Phycoerythr_ab	ECOD (1.6)
H	Phycoerythr_ab	e7t8sH1	A: extended segments	X: Phycoerythrin 545 alpha-subunits (From Topology)	H: Phycoerythrin 545 alpha-subunits (From Topology)	T: Phycoerythrin 545 alpha-subunits	F: Phycoerythr_ab	ECOD (1.6)
P	Phycoerythr_ab	e7t8sP1	A: extended segments	X: Phycoerythrin 545 alpha-subunits (From Topology)	H: Phycoerythrin 545 alpha-subunits (From Topology)	T: Phycoerythrin 545 alpha-subunits	F: Phycoerythr_ab	ECOD (1.6)
L	Phycoerythr_ab	e7t8sL1	A: extended segments	X: Phycoerythrin 545 alpha-subunits (From Topology)	H: Phycoerythrin 545 alpha-subunits (From Topology)	T: Phycoerythrin 545 alpha-subunits	F: Phycoerythr_ab	ECOD (1.6)
D	Phycoerythr_ab	e7t8sD1	A: extended segments	X: Phycoerythrin 545 alpha-subunits (From Topology)	H: Phycoerythrin 545 alpha-subunits (From Topology)	T: Phycoerythrin 545 alpha-subunits	F: Phycoerythr_ab	ECOD (1.6)
G	Phycobilisome	e7t8sG1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
I	Phycobilisome	e7t8sI1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
K	Phycobilisome	e7t8sK1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
O	Phycobilisome	e7t8sO1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
M	Phycobilisome	e7t8sM1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
E	Phycobilisome	e7t8sE1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
C	Phycobilisome	e7t8sC1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
A	Phycobilisome	e7t8sA1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.90.510.10	Alpha Beta	Alpha-Beta Complex	Cryptophytan Phycoerythrin (Alpha-1 Chain)	Chain A	CATH (utative)
P	3.90.510.10	Alpha Beta	Alpha-Beta Complex	Cryptophytan Phycoerythrin (Alpha-1 Chain)	Chain A	CATH (utative)
L	3.90.510.10	Alpha Beta	Alpha-Beta Complex	Cryptophytan Phycoerythrin (Alpha-1 Chain)	Chain A	CATH (utative)
D	3.90.510.10	Alpha Beta	Alpha-Beta Complex	Cryptophytan Phycoerythrin (Alpha-1 Chain)	Chain A	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, F, J, N	PF02972	Phycoerythrin, alpha/beta chain (Phycoerythr_ab)	Phycoerythrin, alpha/beta chain	-	Family
D, H, L, P	PF02972	Phycoerythrin, alpha/beta chain (Phycoerythr_ab)	Phycoerythrin, alpha/beta chain	-	Family
A, C, E, G, I A, C, E, G, I, K, M, O	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, F, J, N	phycoerythrin alpha-1 subunit	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex membrane protein complex light-harvesting complex phycobilisome
D, H, L, P	phycoerythrin alpha-2 subunit	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex membrane protein complex light-harvesting complex phycobilisome
A, C, E, G, I A, C, E, G, I, K, M, O	Phycoerythrin beta subunit	-	photosynthesis metabolic process cellular process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex membrane membrane protein complex intracellular membraneless organelle light-harvesting complex thylakoid membrane membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex membrane membrane protein complex intracellular membraneless organelle light-harvesting complex thylakoid membrane membraneless organelle photosynthetic membrane phycobilisome thylakoid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, F, J, N	IPR004228	Phycoerythrin alpha chain	Domain
B, F, J, N	IPR037011	Phycoerythrin-like alpha chain superfamily	Homologous Superfamily
B, F, J, N	IPR011070	Globular protein, non-globular alpha/beta subunit	Homologous Superfamily
D, H, L, P	IPR004228	Phycoerythrin alpha chain	Domain
D, H, L, P	IPR037011	Phycoerythrin-like alpha chain superfamily	Homologous Superfamily
D, H, L, P	IPR011070	Globular protein, non-globular alpha/beta subunit	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O	IPR009050	Globin-like superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O	IPR012128	Phycobilisome, alpha/beta subunit	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, C, E, G, I A, C, E, G, I, K, M, O	MEN	Parent Component: ASN RESID: AA0070 PSI-MOD : N4-methyl-L-asparagine MOD:00079

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.