7UGW | pdb_00007ugw

M. tuberculosis DNA gyrase cleavage core bound to DNA and evybactin


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyToprim domain-like 8090033 3000737 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyToprim domain-like 8090033 3000737 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADNA_topoisoIV_1ste7ugwA1 A: alpha arraysX: HTHH: HTHT: wingedF: DNA_topoisoIV_1stECOD (1.6)
ADNA_topoisoIV_3rde7ugwA2 A: alpha bundlesX: alpha-helical domain in type II DNA topoisomerase (From Topology)H: alpha-helical domain in type II DNA topoisomerase (From Topology)T: alpha-helical domain in type II DNA topoisomeraseF: DNA_topoisoIV_3rdECOD (1.6)
ADNA_topoisoIV_1st,DNA_topoisoIV_2nd_1e7ugwA3 A: a+b two layersX: a+b domain in type II DNA topoisomerase (From Topology)H: a+b domain in type II DNA topoisomerase (From Topology)T: a+b domain in type II DNA topoisomeraseF: DNA_topoisoIV_1st,DNA_topoisoIV_2nd_1ECOD (1.6)
CDNA_topoisoIV_1ste7ugwC1 A: alpha arraysX: HTHH: HTHT: wingedF: DNA_topoisoIV_1stECOD (1.6)
CDNA_topoisoIV_3rde7ugwC3 A: alpha bundlesX: alpha-helical domain in type II DNA topoisomerase (From Topology)H: alpha-helical domain in type II DNA topoisomerase (From Topology)T: alpha-helical domain in type II DNA topoisomeraseF: DNA_topoisoIV_3rdECOD (1.6)
CDNA_topoisoIV_1st,DNA_topoisoIV_2nd_1e7ugwC2 A: a+b two layersX: a+b domain in type II DNA topoisomerase (From Topology)H: a+b domain in type II DNA topoisomerase (From Topology)T: a+b domain in type II DNA topoisomeraseF: DNA_topoisoIV_1st,DNA_topoisoIV_2nd_1ECOD (1.6)
BgyrB_1st_3e7ugwB1 A: a+b two layersX: SSHS domainH: SSHS domain in type II DNA topoisomerase (From Topology)T: SSHS domain in type II DNA topoisomeraseF: gyrB_1st_3ECOD (1.6)
BDNA_gyraseB_Ce7ugwB2 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: Toprim domainF: DNA_gyraseB_CECOD (1.6)
DgyrB_1st_3e7ugwD2 A: a+b two layersX: SSHS domainH: SSHS domain in type II DNA topoisomerase (From Topology)T: SSHS domain in type II DNA topoisomeraseF: gyrB_1st_3ECOD (1.6)
DDNA_gyraseB_Ce7ugwD1 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: Toprim domainF: DNA_gyraseB_CECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C
PF00521DNA gyrase/topoisomerase IV, subunit A (DNA_topoisoIV)DNA gyrase/topoisomerase IV, subunit AThis entry represents a domain found in type IIA topoisomerases, such as bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA), and mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that r ...This entry represents a domain found in type IIA topoisomerases, such as bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA), and mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth [1].
Domain
B, D
PF00986DNA gyrase B subunit, carboxyl terminus (DNA_gyraseB_C)DNA gyrase B subunit, carboxyl terminus- Family
B, D
PF01751Toprim domain (Toprim)Toprim domain- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C
DNA gyrase subunit A
B, D
DNA gyrase subunit B
E [auth V]DNA (46-MER)---
F [auth E]evybactin---

InterPro: Protein Family Classification InterPro Database Homepage

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
F [auth E]A1AZ2 Parent Component: HIS

F [auth E]DAR
F [auth E]DSN RESIDAA0195 , AA0624

PSI-MOD :  D-serine (Ser) MOD:00202 , D-serine MOD:00891 , D-serine (Cys) MOD:00892 , 2-(L-cystein-S-yl)-D-serine MOD:01987
F [auth E]IAS RESIDAA0195 , AA0624

F [auth E]NLF Parent Component: TRP

RESIDAA0195 , AA0624