7VJP | pdb_00007vjp

Selenomethionine-derived Pectobacterium phage ZF40 apo-Aca2


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADUF1870e7vjpA1 A: alpha arraysX: HTHH: HTHT: tetra-helical, lambda repressor-likeF: DUF1870ECOD (1.6)
BDUF1870e7vjpB1 A: alpha arraysX: HTHH: HTHT: tetra-helical, lambda repressor-likeF: DUF1870ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.3100.10 Mainly Alpha Orthogonal Bundle Putative cytoplasmic protein Putative cytoplasmic proteinCATH (utative)
B1.10.3100.10 Mainly Alpha Orthogonal Bundle Putative cytoplasmic protein Putative cytoplasmic proteinCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF08965Aca2/YdiL-like (Aca2_YdiL)Aca2/YdiL-likeThis domain is found in Aca2 repressor from Pectobacterium phage ZF40, the uncharacterised protein YdiL from Escherichia coli and related sequences. Aca2 regulates the transcription and translation of phage anti-CRISPR acrIF8 gene through DNA binding ...This domain is found in Aca2 repressor from Pectobacterium phage ZF40, the uncharacterised protein YdiL from Escherichia coli and related sequences. Aca2 regulates the transcription and translation of phage anti-CRISPR acrIF8 gene through DNA binding and translationally by binding conserved RNA stem-loops on mRNAs. This protein contains six alpha-helices and two parallel beta-strands [1-3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
anti-CRISPR-associated protein Aca2 - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR015060Aca2/YdiL-likeFamily
A, B
IPR027910YdiL domain superfamilyHomologous Superfamily
A, B
IPR010982Lambda repressor-like, DNA-binding domain superfamilyHomologous Superfamily