7VX8 | pdb_00007vx8

Cryo-EM structure of ATP-bound human very long-chain fatty acid ABC transporter ABCD1

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth A]	F_UNCLASSIFIED	e7vx8A1	A: alpha bundles	X: Type II ABC exporter transmembrane domain fold	H: Type I ABC exporter transmembrane domain fold (From Topology)	T: Type I ABC exporter transmembrane domain fold	F: F_UNCLASSIFIED	ECOD (1.6)
B [auth A]	ABC_tran	e7vx8A2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: ABC_tran	ECOD (1.6)
A [auth B]	F_UNCLASSIFIED	e7vx8B1	A: alpha bundles	X: Type II ABC exporter transmembrane domain fold	H: Type I ABC exporter transmembrane domain fold (From Topology)	T: Type I ABC exporter transmembrane domain fold	F: F_UNCLASSIFIED	ECOD (1.6)
A [auth B]	ABC_tran	e7vx8B2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: ABC_tran	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A]	PF06472	ABC transporter transmembrane region 2 (ABC_membrane_2)	ABC transporter transmembrane region 2	-	Family
A [auth B], B [auth A]	PF00005	ABC transporter (ABC_tran)	ABC transporter	ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ...	ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain Pfam:PF00664. These four domains may belong to a single polypeptide as in Swiss:P13569, or belong in different polypeptide chains.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A]	Peroxisomal Membrane Protein related,ATP-binding cassette sub-family D member 1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding active transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity transporter activity transmembrane transporter activity ATP-dependent activity ABC-type transporter activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity long-chain fatty acid transmembrane transporter activity lipid transporter activity lipid transmembrane transporter activity fatty acid transmembrane transporter activity monocarboxylic acid transmembrane transporter activity carboxylic acid transmembrane transporter activity hydrolase activity, acting on ester bonds thiolester hydrolase activity deacylase activity fatty acyl-CoA hydrolase activity very long-chain fatty acyl-CoA hydrolase activity acyl-CoA hydrolase activity ADP binding identical protein binding protein binding sulfur compound transmembrane transporter activity amide transmembrane transporter activity ABC-type fatty-acyl-CoA transporter activity ATPase-coupled lipid transmembrane transporter activity nucleobase-containing compound transmembrane transporter activity organophosphate ester transmembrane transporter activity protein homodimerization activity protein dimerization activity enzyme binding	fatty acid metabolic process lipid catabolic process catabolic process oxoacid metabolic process carboxylic acid metabolic process primary metabolic process lipid modification organic acid metabolic process organic acid catabolic process fatty acid catabolic process monocarboxylic acid catabolic process fatty acid oxidation carboxylic acid catabolic process fatty acid beta-oxidation fatty acid metabolic process lipid catabolic process catabolic process oxoacid metabolic process carboxylic acid metabolic process primary metabolic process lipid modification organic acid metabolic process organic acid catabolic process fatty acid catabolic process monocarboxylic acid catabolic process fatty acid oxidation carboxylic acid catabolic process fatty acid beta-oxidation metabolic process cellular process small molecule metabolic process monocarboxylic acid metabolic process lipid oxidation small molecule catabolic process lipid metabolic process cellular component organization peroxisome organization organelle organization cellular component organization or biogenesis very long-chain fatty acid metabolic process very long-chain fatty acid catabolic process cellular localization carboxylic acid transmembrane transport transport peroxisomal membrane transport fatty acid transmembrane transport localization monocarboxylic acid transport fatty acid transport establishment of localization in cell long-chain fatty acid transport long-chain fatty acid import into peroxisome organic anion transport carboxylic acid transport intracellular lipid transport lipid localization lipid transport intracellular transport establishment of localization organic acid transport peroxisomal transport transmembrane transport macromolecule localization regulation of cellular process ketone metabolic process regulation of lipid metabolic process positive regulation of biological process regulation of primary metabolic process regulation of fatty acid oxidation positive regulation of metabolic process positive regulation of fatty acid beta-oxidation positive regulation of lipid catabolic process regulation of small molecule metabolic process positive regulation of lipid metabolic process positive regulation of cellular process positive regulation of fatty acid metabolic process regulation of biological process regulation of fatty acid beta-oxidation biological regulation regulation of catabolic process regulation of lipid catabolic process regulation of ketone metabolic process positive regulation of catabolic process positive regulation of fatty acid oxidation regulation of fatty acid metabolic process positive regulation of small molecule metabolic process regulation of metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process lipid biosynthetic process organic acid biosynthetic process fatty acid biosynthetic process fatty acid elongation carboxylic acid biosynthetic process biosynthetic process fatty acid derivative biosynthetic process fatty acid derivative metabolic process unsaturated fatty acid metabolic process regulation of unsaturated fatty acid biosynthetic process positive regulation of fatty acid biosynthetic process positive regulation of biosynthetic process regulation of biosynthetic process unsaturated fatty acid biosynthetic process positive regulation of lipid biosynthetic process regulation of fatty acid biosynthetic process regulation of lipid biosynthetic process positive regulation of unsaturated fatty acid biosynthetic process aerobic respiration cellular respiration oxidative phosphorylation energy derivation by oxidation of organic compounds regulation of generation of precursor metabolites and energy generation of precursor metabolites and energy regulation of cellular respiration regulation of aerobic respiration regulation of oxidative phosphorylation membrane organization developmental process multicellular organismal process nervous system development myelination multicellular organism development myelin maintenance axon ensheathment ensheathment of neurons plasma membrane organization anatomical structure development endomembrane system organization system development long-chain fatty acid metabolic process olefinic compound metabolic process alpha-linolenic acid metabolic process fatty-acyl-CoA catabolic process organophosphate catabolic process nucleoside phosphate catabolic process fatty acid derivative catabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process fatty-acyl-CoA metabolic process amide metabolic process phosphorus metabolic process nucleoside phosphate metabolic process very long-chain fatty-acyl-CoA metabolic process purine-containing compound catabolic process purine-containing compound metabolic process nucleobase-containing compound catabolic process sulfur compound catabolic process very long-chain fatty-acyl-CoA catabolic process organophosphate metabolic process reactive oxygen species biosynthetic process negative regulation of metabolic process reactive oxygen species metabolic process negative regulation of biological process regulation of reactive oxygen species biosynthetic process negative regulation of reactive oxygen species metabolic process negative regulation of reactive oxygen species biosynthetic process negative regulation of biosynthetic process negative regulation of cellular process regulation of reactive oxygen species metabolic process cellular response to stimulus response to stimulus cellular response to oxidative stress regulation of cellular response to stress cellular response to chemical stress regulation of cellular response to oxidative stress response to oxidative stress cellular response to chemical stimulus cellular response to stress regulation of response to stimulus response to stress regulation of response to stress response to chemical regulation of response to oxidative stress long-chain fatty acid catabolic process regulation of mitochondrial depolarization mitochondrial depolarization regulation of membrane depolarization regulation of mitochondrial membrane potential membrane depolarization regulation of biological quality regulation of membrane potential fatty acid homeostasis chemical homeostasis homeostatic process lipid homeostasis linoleic acid metabolic process sterol homeostasis long-chain fatty acid biosynthetic process plasma membrane bounded cell projection organization cell projection organization neuron projection maintenance neuron projection organization regulation of cytokine production involved in inflammatory response cytokine production regulation of cytokine production regulation of multicellular organismal process negative regulation of cytokine production involved in inflammatory response negative regulation of macromolecule metabolic process production of molecular mediator involved in inflammatory response defense response negative regulation of cytokine production regulation of macromolecule metabolic process cytokine production involved in inflammatory response gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process inflammatory response macromolecule metabolic process negative regulation of multicellular organismal process	membrane-bounded organelle intracellular anatomical structure membrane peroxisome intracellular membrane-bounded organelle microbody membrane intracellular organelle cellular anatomical structure bounding membrane of organelle organelle peroxisomal membrane microbody cytoplasm organelle membrane membrane-bounded organelle intracellular anatomical structure membrane peroxisome intracellular membrane-bounded organelle microbody membrane intracellular organelle cellular anatomical structure bounding membrane of organelle organelle peroxisomal membrane microbody cytoplasm organelle membrane mitochondrial membrane mitochondrion organelle envelope mitochondrial envelope cytosol vacuolar membrane lytic vacuole vacuole lytic vacuole membrane lysosomal membrane lysosome perinuclear region of cytoplasm organelle subcompartment endomembrane system endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A]	IPR017871	ABC transporter-like, conserved site	Conserved Site
A [auth B], B [auth A]	IPR003439	ABC transporter-like, ATP-binding domain	Domain
A [auth B], B [auth A]	IPR036640	ABC transporter type 1, transmembrane domain superfamily	Homologous Superfamily
A [auth B], B [auth A]	IPR003593	AAA+ ATPase domain	Domain
A [auth B], B [auth A]	IPR011527	ABC transporter type 1, transmembrane domain	Domain
A [auth B], B [auth A]	IPR050835	ATP-binding cassette sub-family D	Family
A [auth B], B [auth A]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A [auth B], B [auth A]	IPR003439	ABC transporter-like, ATP-binding domain	Domain
A [auth B], B [auth A]	IPR050835	ATP-binding cassette sub-family D	Family
A [auth B], B [auth A]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A [auth B], B [auth A]	IPR003593	AAA+ ATPase domain	Domain
A [auth B], B [auth A]	IPR011527	ABC transporter type 1, transmembrane domain	Domain
A [auth B], B [auth A]	IPR005283	Peroxysomal long chain fatty acyl transporter	Family
A [auth B], B [auth A]	IPR017871	ABC transporter-like, conserved site	Conserved Site
A [auth B], B [auth A]	IPR036640	ABC transporter type 1, transmembrane domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth B], B [auth A]	Pharos: P33897	adrenoleukodystrophy leukodystrophy peroxisomal disease Addison disease atypical teratoid rhabdoid tumor intellectual disability X-linked adrenal hypoplasia congenita Contiguous Abcd1-Dxs1375e Deletion Syndrome adrenomyeloneuropathy glioblastoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth B], B [auth A]	OPM	Transmembrane	Alpha-helical polytopic	ABC transporters	ABC transporter D familiy (ABCD)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth B], B [auth A]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A [auth B], B [auth A]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth B], B [auth A]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	ATP Binding Cassette (ABC) Transporters	peroxisomal fatty acid transporter ABCD1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.