7WQ5 | pdb_00007wq5

Crystal structure of Arabidopsis transcriptional factor WRINKLED1 with dsDNA

External Resource: Annotation

Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.730.10	Alpha Beta	2-Layer Sandwich	GCC-box Binding Domain	AP2/ERF domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00847	AP2 domain (AP2)	AP2 domain	This 60 amino acid residue domain can bind to DNA [2] and is found in transcription factor proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Ethylene-responsive transcription factor WRI1	DNA binding binding nucleic acid binding protein binding kinase binding enzyme binding transcription regulator activity DNA-binding transcription factor activity	carbohydrate metabolic process regulation of biological process regulation of cellular process biological regulation primary metabolic process metabolic process cellular process regulation of carbohydrate metabolic process regulation of metabolic process regulation of primary metabolic process neutral lipid metabolic process neutral lipid biosynthetic process lipid biosynthetic process acylglycerol biosynthetic process carbohydrate metabolic process regulation of biological process regulation of cellular process biological regulation primary metabolic process metabolic process cellular process regulation of carbohydrate metabolic process regulation of metabolic process regulation of primary metabolic process neutral lipid metabolic process neutral lipid biosynthetic process lipid biosynthetic process acylglycerol biosynthetic process biosynthetic process glycerolipid biosynthetic process triglyceride metabolic process triglyceride biosynthetic process glycerolipid metabolic process acylglycerol metabolic process lipid metabolic process cellular response to stimulus phosphorelay signal transduction system response to stimulus signaling cellular response to ethylene stimulus response to endogenous stimulus hormone-mediated signaling pathway intracellular signal transduction cell communication cellular response to endogenous stimulus cellular response to chemical stimulus ethylene-activated signaling pathway response to hormone response to chemical response to ethylene signal transduction cellular response to hormone stimulus positive regulation of cutin biosynthetic process positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process anatomical structure development positive regulation of macromolecule metabolic process positive regulation of cellular process developmental process regulation of biosynthetic process regulation of cutin biosynthetic process cutin-based cuticle development regulation of macromolecule metabolic process macromolecule biosynthetic process cutin biosynthetic process regulation of macromolecule biosynthetic process macromolecule metabolic process ribonucleotide catabolic process pyridine nucleotide catabolic process aerobic respiration oxoacid metabolic process carbohydrate catabolic process organophosphate catabolic process carbohydrate derivative metabolic process regulation of generation of precursor metabolites and energy nucleoside phosphate catabolic process organic acid metabolic process regulation of ATP metabolic process nucleobase-containing compound metabolic process regulation of purine nucleotide catabolic process regulation of small molecule metabolic process glycolytic process regulation of nucleotide metabolic process regulation of phosphate metabolic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process small molecule metabolic process regulation of nucleobase-containing compound metabolic process purine ribonucleotide catabolic process phosphorus metabolic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process regulation of carbohydrate catabolic process pyruvate metabolic process purine nucleoside diphosphate metabolic process purine-containing compound catabolic process nucleotide metabolic process regulation of purine nucleotide metabolic process nucleobase-containing compound catabolic process nucleoside diphosphate metabolic process purine nucleoside diphosphate catabolic process nucleoside diphosphate catabolic process regulation of nucleotide catabolic process regulation of phosphorus metabolic process nucleoside triphosphate metabolic process monocarboxylic acid metabolic process purine ribonucleotide metabolic process pyridine-containing compound catabolic process ribose phosphate metabolic process cellular respiration catabolic process ATP metabolic process energy derivation by oxidation of organic compounds purine nucleotide metabolic process ribonucleotide metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process ribonucleoside diphosphate metabolic process ribonucleoside diphosphate catabolic process nucleotide catabolic process purine nucleoside triphosphate metabolic process purine nucleotide catabolic process carbohydrate derivative catabolic process ADP catabolic process carboxylic acid metabolic process regulation of catabolic process generation of precursor metabolites and energy regulation of glycolytic process purine-containing compound metabolic process ADP metabolic process organophosphate metabolic process purine ribonucleoside diphosphate metabolic process purine ribonucleoside diphosphate catabolic process response to carbohydrate response to sucrose response to disaccharide response to oxygen-containing compound	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
C [auth F], E [auth D]	DNA (5'-D(PGPTPGPGPAPCPGPAPTPGPAPAPAPCPCPGPAPGPGPAPAPGPTPA)-3')	-	-	-
D [auth C], F [auth E]	DNA (5'-D(PTPAPCPTPTPCPCPTPCPGPGPTPTPTPCPAPTPCPGPTPCPCPAPC)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR001471	AP2/ERF domain	Domain
A, B	IPR036955	AP2/ERF domain superfamily	Homologous Superfamily
A, B	IPR016177	DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.