Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth D] | SCOP2B Superfamily | Translational proteins | 8089146 | 3000811 | SCOP2B (2022-06-29) |
F [auth E] | SCOP2B Superfamily | Ribosomal protein L4 | 8080698 | 3001146 | SCOP2B (2022-06-29) |
G [auth F] | SCOP2B Superfamily | RL5-like | 8073880 | 3001709 | SCOP2B (2022-06-29) |
L [auth K] | SCOP2B Superfamily | Ribosomal protein L13 | 8066067 | 3001134 | SCOP2B (2022-06-29) |
M [auth L] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072026 | 3000433 | SCOP2B (2022-06-29) |
N [auth M] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070563 | 3001045 | SCOP2B (2022-06-29) |
O [auth N] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8076049 | 3000884 | SCOP2B (2022-06-29) |
P [auth O] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8089012 | 3000995 | SCOP2B (2022-06-29) |
R [auth Q] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082427 | 3000334 | SCOP2B (2022-06-29) |
S [auth R] | SCOP2B Superfamily | Ribosomal protein L20 | 8075008 | 3000563 | SCOP2B (2022-06-29) |
T [auth S] | SCOP2B Superfamily | l21p-like | 8082445 | 3002005 | SCOP2B (2022-06-29) |
U [auth T] | SCOP2B Superfamily | Ribosomal protein L22 | 8081516 | 3001078 | SCOP2B (2022-06-29) |
V [auth U] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8077101 | 3000210 | SCOP2B (2022-06-29) |
W [auth V] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082509 | 3000334 | SCOP2B (2022-06-29) |
X [auth W] | SCOP2B Superfamily | Ribosomal protein L25-like | 8082279 | 3001161 | SCOP2B (2022-06-29) |
Y [auth X] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8075032 | 3000539 | SCOP2B (2022-06-29) |
Z [auth Y] | SCOP2B Superfamily | L28p-like | 8089398 | 3001966 | SCOP2B (2022-06-29) |
AA [auth Z] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8080678 | 3000713 | SCOP2B (2022-06-29) |
BA [auth a] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8076279 | 3001378 | SCOP2B (2022-06-29) |
DA [auth c] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8075054 | 3001320 | SCOP2B (2022-06-29) |
FA [auth e] | SCOP2B Superfamily | L35p-like | 8083338 | 3000790 | SCOP2B (2022-06-29) |
GA [auth f] | SCOP2B Superfamily | Ribosomal protein L36 | 8083308 | 3001346 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth C] | F_UNCLASSIFIED | e7xamC1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth C] | F_UNCLASSIFIED | e7xamC2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth D] | F_UNCLASSIFIED | e7xamD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth E] | F_UNCLASSIFIED | e7xamE1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: F_UNCLASSIFIED | ECOD (1.6) |
G [auth F] | F_UNCLASSIFIED | e7xamF1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: F_UNCLASSIFIED | ECOD (1.6) |
H [auth G] | F_UNCLASSIFIED | e7xamG2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: F_UNCLASSIFIED | ECOD (1.6) |
I [auth H] | F_UNCLASSIFIED | e7xamH1 | A: a+b two layers | X: L9 N-domain-like | H: L9 N-domain-like (From Topology) | T: L9 N-domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
I [auth H] | F_UNCLASSIFIED | e7xamH2 | A: a+b two layers | X: Ribosomal protein L9 C-domain (From Topology) | H: Ribosomal protein L9 C-domain (From Topology) | T: Ribosomal protein L9 C-domain | F: F_UNCLASSIFIED | ECOD (1.6) |
J [auth I] | F_UNCLASSIFIED | e7xamI1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: F_UNCLASSIFIED | ECOD (1.6) |
K [auth J] | F_UNCLASSIFIED | e7xamJ2 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: F_UNCLASSIFIED | ECOD (1.6) |
K [auth J] | F_UNCLASSIFIED | e7xamJ1 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: F_UNCLASSIFIED | ECOD (1.6) |
L [auth K] | F_UNCLASSIFIED | e7xamK1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: F_UNCLASSIFIED | ECOD (1.6) |
M [auth L] | F_UNCLASSIFIED | e7xamL1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: F_UNCLASSIFIED | ECOD (1.6) |
N [auth M] | F_UNCLASSIFIED | e7xamM1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: F_UNCLASSIFIED | ECOD (1.6) |
O [auth N] | F_UNCLASSIFIED | e7xamN1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: F_UNCLASSIFIED | ECOD (1.6) |
P [auth O] | F_UNCLASSIFIED | e7xamO1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: F_UNCLASSIFIED | ECOD (1.6) |
Q [auth P] | F_UNCLASSIFIED | e7xamP1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: F_UNCLASSIFIED | ECOD (1.6) |
R [auth Q] | F_UNCLASSIFIED | e7xamQ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: F_UNCLASSIFIED | ECOD (1.6) |
S [auth R] | F_UNCLASSIFIED | e7xamR1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: F_UNCLASSIFIED | ECOD (1.6) |
T [auth S] | F_UNCLASSIFIED | e7xamS1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: F_UNCLASSIFIED | ECOD (1.6) |
U [auth T] | F_UNCLASSIFIED | e7xamT1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: F_UNCLASSIFIED | ECOD (1.6) |
V [auth U] | F_UNCLASSIFIED | e7xamU1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: F_UNCLASSIFIED | ECOD (1.6) |
W [auth V] | F_UNCLASSIFIED | e7xamV1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: F_UNCLASSIFIED | ECOD (1.6) |
X [auth W] | F_UNCLASSIFIED | e7xamW2 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: F_UNCLASSIFIED | ECOD (1.6) |
X [auth W] | F_UNCLASSIFIED | e7xamW1 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology) | T: Ribosomal protein TL5/L25 C-terminal domain-related | F: F_UNCLASSIFIED | ECOD (1.6) |
Y [auth X] | F_UNCLASSIFIED | e7xamX1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: F_UNCLASSIFIED | ECOD (1.6) |
Z [auth Y] | F_UNCLASSIFIED | e7xamY1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: F_UNCLASSIFIED | ECOD (1.6) |
AA [auth Z] | F_UNCLASSIFIED | e7xamZ1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: F_UNCLASSIFIED | ECOD (1.6) |
BA [auth a] | F_UNCLASSIFIED | e7xama1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: F_UNCLASSIFIED | ECOD (1.6) |
CA [auth b] | F_UNCLASSIFIED | e7xamb1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
DA [auth c] | F_UNCLASSIFIED | e7xamc1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
EA [auth d] | F_UNCLASSIFIED | e7xamd1 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: F_UNCLASSIFIED | ECOD (1.6) |
FA [auth e] | F_UNCLASSIFIED | e7xame1 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: F_UNCLASSIFIED | ECOD (1.6) |
GA [auth f] | F_UNCLASSIFIED | e7xamf1 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: F_UNCLASSIFIED | ECOD (1.6) |
HA [auth g] | F_UNCLASSIFIED | e7xamg1 | A: few secondary structure elements | X: Ribosomal protein L31p (From Topology) | H: Ribosomal protein L31p (From Topology) | T: Ribosomal protein L31p | F: F_UNCLASSIFIED | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
G [auth F] | 3.30.1440.10 | Alpha Beta | 2-Layer Sandwich | 50s Ribosomal Protein L5 | Chain: A, | CATH (utative) |
H [auth G] | 3.90.930.12 | Alpha Beta | Alpha-Beta Complex | Outer Surface Protein A | domain 3 | CATH (utative) |
I [auth H] | 3.40.5.10 | Alpha Beta | 3-Layer(aba) Sandwich | Ribosomal Protein L9 | domain 1 | CATH (utative) |
I [auth H] | 3.10.430.100 | Alpha Beta | Roll | Ribosomal Protein L9 | domain 2 | CATH (utative) |
K [auth J] | 3.30.1550.10 | Alpha Beta | 2-Layer Sandwich | Ribosomal protein L11, N-terminal domain | Ribosomal protein L11/L12, N-terminal domain | CATH (utative) |
K [auth J] | 1.10.10.250 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Ribosomal protein L11/L12, C-terminal domain | CATH (utative) |
N [auth M] | 3.100.10.10 | Alpha Beta | Ribosomal Protein L15 | Chain: K | domain 2 | CATH (utative) |
U [auth T] | 3.90.470.10 | Alpha Beta | Alpha-Beta Complex | Ribosomal Protein L22 | Chain A | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth A] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
C [auth B] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
D [auth C] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
D [auth C] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
D [auth C] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
E [auth D] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
E [auth D] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
F [auth E] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
F [auth E] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
G [auth F] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
G [auth F] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
G [auth F] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | Domain | |
H [auth G] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
H [auth G] | PF01197 | Ribosomal protein L31 (Ribosomal_L31) | Ribosomal protein L31 | - | Family |
I [auth H] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | Domain | |
I [auth H] | PF03948 | Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C) | Ribosomal protein L9, C-terminal domain | Domain | |
J [auth I] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
K [auth J] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
K [auth J] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
L [auth K] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
M [auth L] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
N [auth M] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
O [auth N] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
P [auth O] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
Q [auth P] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
R [auth Q] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
S [auth R] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
T [auth S] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
U [auth T] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
V [auth U] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
W [auth V] | PF17136 | Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24) | Ribosomal proteins 50S L24/mitochondrial 39S L24 | - | Family |
W [auth V] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
X [auth W] | PF14693 | Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C) | Ribosomal protein TL5, C-terminal domain | This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ... | Domain |
X [auth W] | PF01386 | Ribosomal L25p family (Ribosomal_L25p) | Ribosomal L25p family | Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. | Domain |
Z [auth Y] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
AA [auth Z] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |