7Z0K | pdb_00007z0k

human PEX13 SH3 in complex with PEX5 W4 (WxxxF/Y) motif

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	F_UNCLASSIFIED	e7z0kB1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: F_UNCLASSIFIED	ECOD (1.6)
A	F_UNCLASSIFIED	e7z0kA1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: F_UNCLASSIFIED	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (utative)
A	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF14604	Variant SH3 domain (SH3_9)	Variant SH3 domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Peroxisomal membrane protein PEX13,Peroxisomal targeting signal 1 receptor	peroxisome matrix targeting signal-1 binding signal sequence binding binding peroxisome targeting sequence binding peptide binding small GTPase binding protein binding enzyme binding GTPase binding peroxisome membrane targeting sequence binding protein carrier chaperone molecular carrier activity macromolecule transmembrane transporter activity protein transporter activity peroxisome matrix targeting signal-1 binding signal sequence binding binding peroxisome targeting sequence binding peptide binding small GTPase binding protein binding enzyme binding GTPase binding peroxisome membrane targeting sequence binding protein carrier chaperone molecular carrier activity macromolecule transmembrane transporter activity protein transporter activity protein transmembrane transporter activity transporter activity transmembrane transporter activity	cellular localization establishment of protein localization protein localization to peroxisome nitrogen compound transport transport peroxisomal membrane transport cellular component organization localization peroxisome organization establishment of localization in cell cellular component organization or biogenesis intracellular protein localization establishment of protein localization to peroxisome protein import into peroxisome membrane cellular localization establishment of protein localization protein localization to peroxisome nitrogen compound transport transport peroxisomal membrane transport cellular component organization localization peroxisome organization establishment of localization in cell cellular component organization or biogenesis intracellular protein localization establishment of protein localization to peroxisome protein import into peroxisome membrane establishment of protein localization to membrane intracellular transport localization within membrane protein localization to membrane establishment of localization peroxisomal transport organelle organization establishment of protein localization to organelle protein transport protein localization to organelle macromolecule localization cellular process intracellular protein transport cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein tetramerization protein-containing complex assembly developmental process multicellular organismal process head development cellular developmental process forebrain generation of neurons forebrain development animal organ development brain development nervous system development generation of neurons central nervous system neuron differentiation multicellular organism development neurogenesis central nervous system development neuron differentiation cell differentiation anatomical structure development cerebral cortex neuron differentiation forebrain neuron differentiation system development fatty acid metabolic process lipid catabolic process catabolic process oxoacid metabolic process carboxylic acid metabolic process primary metabolic process lipid modification organic acid metabolic process organic acid catabolic process fatty acid catabolic process monocarboxylic acid catabolic process fatty acid oxidation carboxylic acid catabolic process fatty acid beta-oxidation metabolic process small molecule metabolic process monocarboxylic acid metabolic process lipid oxidation small molecule catabolic process lipid metabolic process cell development protein transmembrane import into intracellular organelle protein import into peroxisome matrix, translocation protein transmembrane transport intracellular protein transmembrane transport protein import into peroxisome matrix transmembrane transport cerebral cortex cell migration pallium development cerebral cortex development telencephalon cell migration forebrain cell migration cell migration telencephalon development cell motility regulation of biological process regulation of cellular process regulation of cellular component organization negative regulation of cellular component organization biological regulation negative regulation of biological process regulation of cellular component biogenesis negative regulation of protein-containing complex assembly regulation of protein-containing complex assembly negative regulation of cellular process autophagy of peroxisome macroautophagy pexophagy autophagy process utilizing autophagic mechanism system process nervous system process neuromuscular process protein targeting to peroxisome protein targeting endoplasmic reticulum organization endomembrane system organization protein-containing complex disassembly protein import into peroxisome matrix, substrate release cellular component disassembly cellular response to stimulus response to stimulus cellular response to oxidative stress response to oxygen-containing compound cellular response to chemical stress cellular response to oxygen-containing compound response to reactive oxygen species cellular response to reactive oxygen species response to oxidative stress cellular response to chemical stimulus cellular response to stress response to stress response to chemical receptor metabolic process protein import into peroxisome matrix, receptor recycling receptor recycling macromolecule metabolic process mitochondrial membrane organization membrane organization mitochondrion organization regulation of multicellular organism growth regulation of growth regulation of developmental growth regulation of developmental process developmental growth growth positive regulation of biological process positive regulation of multicellular organism growth positive regulation of developmental process multicellular organism growth positive regulation of growth positive regulation of multicellular organismal process regulation of multicellular organismal process positive regulation of developmental growth very long-chain fatty acid metabolic process neuron migration protein import into peroxisome matrix, docking behavior locomotory behavior suckling behavior feeding behavior microtubule-based peroxisome localization organelle localization microtubule-based process peroxisome localization fatty acid alpha-oxidation	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane cytosol protein-containing complex Golgi apparatus endomembrane system peroxisome membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane cytosol protein-containing complex Golgi apparatus endomembrane system peroxisome microbody microbody membrane bounding membrane of organelle peroxisomal membrane organelle membrane peroxisomal matrix membrane-enclosed lumen intracellular organelle lumen organelle lumen microbody lumen peroxisomal importomer complex transporter complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, B	IPR019734	Tetratricopeptide repeat	Repeat
A, B	IPR024111	PEX5/PEX5L	Family
A, B	IPR001452	SH3 domain	Domain
A, B	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A, B	IPR007223	Peroxin 13, N-terminal	Domain
A, B	IPR035463	Peroxin 13	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q92968	Zellweger spectrum disorders rhizomelic chondrodysplasia punctata type 5 peroxisome biogenesis disorder 2A (Zellweger) peroxisome biogenesis disorder 2B peroxisomal disease rhizomelic chondrodysplasia punctata peroxisome biogenesis disorder type 3B Adrenoleukodystrophy, Neonatal cataract diabetes mellitus adult Refsum disease cholestasis hydrops fetalis intellectual disability arthrogryposis Zellweger spectrum disorders rhizomelic chondrodysplasia punctata type 5 peroxisome biogenesis disorder 2A (Zellweger) peroxisome biogenesis disorder 2B peroxisomal disease rhizomelic chondrodysplasia punctata peroxisome biogenesis disorder type 3B Adrenoleukodystrophy, Neonatal cataract diabetes mellitus adult Refsum disease cholestasis hydrops fetalis intellectual disability arthrogryposis inborn errors of metabolism peroxisome biogenesis disorder 1A (Zellweger) Zellweger spectrum disorders adrenoleukodystrophy peroxisome biogenesis disorder 11A (Zellweger) peroxisome biogenesis disorder 11B peroxisomal disease peroxisome biogenesis disorder type 3B Neonatal adrenoleukodystrophy pancreatic ductal adenocarcinoma peroxisome biogenesis disorder peroxisome biogenesis disorder 1A (Zellweger) primitive neuroectodermal tumor arthrogryposis rheumatoid arthritis cataract inborn errors of metabolism intellectual disability malignant ependymoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm peroxisome biogenesis disorder 2B psoriasis atopic eczema spina bifida celiac disease Crohn disease invasive ductal breast carcinoma medulloblastoma ovarian cancer adrenomyeloneuropathy psoriatic arthritis atypical teratoid rhabdoid tumor ulcerative colitis cholestasis hydrops fetalis inflammatory bowel disease

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.