7ZQD | pdb_00007zqd

Dimeric PSI of Chlamydomonas reinhardtii at 2.97 A resolution


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth J]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8094723 3000824 SCOP2B (2022-06-29)
CA [auth J2]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8094723 3000824 SCOP2B (2022-06-29)
Z [auth F2]SCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8094180 3000813 SCOP2B (2022-06-29)
FSCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8094180 3000813 SCOP2B (2022-06-29)
Y [auth E2]SCOP2B SuperfamilyElectron transport accessory proteins 8094773 3000325 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyElectron transport accessory proteins 8094773 3000325 SCOP2B (2022-06-29)
X [auth D2]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8095071 3000951 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPhotosystem I subunit PsaD 8095071 3000951 SCOP2B (2022-06-29)
W [auth C2]SCOP2B Superfamily4Fe-4S ferredoxins 8093860 3000020 SCOP2B (2022-06-29)
CSCOP2B Superfamily4Fe-4S ferredoxins 8093860 3000020 SCOP2B (2022-06-29)
V [auth B2]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094499 3000850 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094499 3000850 SCOP2B (2022-06-29)
T [auth 9]SCOP2B SuperfamilyChlorophyll a-b binding protein 8097194 3000343 SCOP2B (2022-06-29)
NA [auth 92]SCOP2B SuperfamilyChlorophyll a-b binding protein 8097194 3000343 SCOP2B (2022-06-29)
S [auth 6]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099928 3000343 SCOP2B (2022-06-29)
MA [auth 62]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099928 3000343 SCOP2B (2022-06-29)
R [auth 5]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099932 3000343 SCOP2B (2022-06-29)
LA [auth 52]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099932 3000343 SCOP2B (2022-06-29)
Q [auth 4]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099934 3000343 SCOP2B (2022-06-29)
KA [auth 42]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099934 3000343 SCOP2B (2022-06-29)
O [auth 8]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099930 3000343 SCOP2B (2022-06-29)
IA [auth 82]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099930 3000343 SCOP2B (2022-06-29)
N [auth 7]SCOP2B SuperfamilyChlorophyll a-b binding protein 8100068 3000343 SCOP2B (2022-06-29)
HA [auth 72]SCOP2B SuperfamilyChlorophyll a-b binding protein 8100068 3000343 SCOP2B (2022-06-29)
P [auth Z]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099102 3000343 SCOP2B (2022-06-29)
L [auth 1]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099102 3000343 SCOP2B (2022-06-29)
JA [auth Z2]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099102 3000343 SCOP2B (2022-06-29)
FA [auth 12]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099102 3000343 SCOP2B (2022-06-29)
J [auth L]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8097190 3000870 SCOP2B (2022-06-29)
DA [auth L2]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8097190 3000870 SCOP2B (2022-06-29)
U [auth A2]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094461 3000850 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094461 3000850 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth J]e7zqdJ1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
CA [auth J2]e7zqdJ21 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
H [auth I]e7zqdI1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
BA [auth I2]e7zqdI21 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
Ge7zqdG1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
AA [auth G2]e7zqdG21 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
Z [auth F2]e7zqdF21 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
Fe7zqdF1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
Y [auth E2]e7zqdE21 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
Ee7zqdE1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
X [auth D2]e7zqdD21 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
De7zqdD1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
W [auth C2]e7zqdC21 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
Ce7zqdC1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
V [auth B2]e7zqdB21 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
Be7zqdB1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
T [auth 9]e7zqd91 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
NA [auth 92]e7zqd921 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
S [auth 6]e7zqd61 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
MA [auth 62]e7zqd621 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
R [auth 5]e7zqd51 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
LA [auth 52]e7zqd521 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
Q [auth 4]e7zqd41 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
KA [auth 42]e7zqd421 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
O [auth 8]e7zqd81 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
IA [auth 82]e7zqd821 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
N [auth 7]e7zqd71 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
HA [auth 72]e7zqd721 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
M [auth 3]e7zqd31 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
GA [auth 32]e7zqd321 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
P [auth Z]e7zqdZ1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
L [auth 1]e7zqd11 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
JA [auth Z2]e7zqdZ21 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
FA [auth 12]e7zqd121 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
Ke7zqdK1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
EA [auth K2]e7zqdK21 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
J [auth L]e7zqdL1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
DA [auth L2]e7zqdL21 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
U [auth A2]e7zqdA21 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)
Ae7zqdA1 A: a/b three-layered sandwichesX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
CA [auth J2],
I [auth J]
PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
BA [auth I2],
H [auth I]
PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
C,
W [auth C2]
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
B,
V [auth B2]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
NA [auth 92],
T [auth 9]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
MA [auth 62],
S [auth 6]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
LA [auth 52],
R [auth 5]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
KA [auth 42],
Q [auth 4]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
IA [auth 82],
O [auth 8]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
HA [auth 72],
N [auth 7]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
FA [auth 12],
JA [auth Z2],
L [auth 1],
P [auth Z]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
A,
U [auth A2]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
CA [auth J2],
I [auth J]
Photosystem I reaction center subunit IX-
BA [auth I2],
H [auth I]
Photosystem I reaction center subunit VIII-
AA [auth G2],
G
Photosystem I reaction center subunit V, chloroplastic-
F,
Z [auth F2]
Photosystem I reaction center subunit III, chloroplastic-
E,
Y [auth E2]
Photosystem I reaction center subunit IV, chloroplastic-
D,
X [auth D2]
Photosystem I reaction center subunit II, chloroplastic-
C,
W [auth C2]
Photosystem I iron-sulfur center
B,
V [auth B2]
Photosystem I P700 chlorophyll a apoprotein A2
NA [auth 92],
T [auth 9]
Chlorophyll a-b binding protein, chloroplastic
MA [auth 62],
S [auth 6]
Chlorophyll a-b binding protein, chloroplastic
LA [auth 52],
R [auth 5]
Chlorophyll a-b binding protein, chloroplastic
KA [auth 42],
Q [auth 4]
Chlorophyll a-b binding protein, chloroplastic (Lhca4)
IA [auth 82],
O [auth 8]
Chlorophyll a-b binding protein, chloroplastic
HA [auth 72],
N [auth 7]
Chlorophyll a-b binding protein, chloroplastic
GA [auth 32],
M [auth 3]
Chlorophyll a-b binding protein, chloroplastic---
FA [auth 12],
JA [auth Z2],
L [auth 1],
P [auth Z]
Chlorophyll a-b binding protein, chloroplastic
EA [auth K2],
K
Photosystem I reaction center subunit psaK, chloroplastic-
DA [auth L2],
J [auth L]
PSI subunit V-
A,
U [auth A2]
Photosystem I P700 chlorophyll a apoprotein A1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
CA [auth J2],
I [auth J]
IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
CA [auth J2],
I [auth J]
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
BA [auth I2],
H [auth I]
IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
BA [auth I2],
H [auth I]
IPR001302Photosystem I reaction centre subunit VIIIFamily
AA [auth G2],
G
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
AA [auth G2],
G
IPR017494Photosystem I reaction center subunit VFamily
AA [auth G2],
G
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
AA [auth G2],
G
IPR000549Photosystem I reaction center subunit V/PsaKFamily
F,
Z [auth F2]
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
F,
Z [auth F2]
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
E,
Y [auth E2]
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
E,
Y [auth E2]
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
D,
X [auth D2]
IPR003685Photosystem I PsaDFamily
D,
X [auth D2]
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
C,
W [auth C2]
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
C,
W [auth C2]
IPR050157Photosystem I iron-sulfur centerFamily
C,
W [auth C2]
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
C,
W [auth C2]
IPR017491Photosystem I protein PsaCFamily
B,
V [auth B2]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
B,
V [auth B2]
IPR001280Photosystem I PsaA/PsaBFamily
B,
V [auth B2]
IPR006244Photosystem I PsaBFamily
B,
V [auth B2]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
NA [auth 92],
T [auth 9]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
NA [auth 92],
T [auth 9]
IPR022796Chlorophyll A-B binding proteinFamily
MA [auth 62],
S [auth 6]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
MA [auth 62],
S [auth 6]
IPR022796Chlorophyll A-B binding proteinFamily
LA [auth 52],
R [auth 5]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
LA [auth 52],
R [auth 5]
IPR022796Chlorophyll A-B binding proteinFamily
KA [auth 42],
Q [auth 4]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
KA [auth 42],
Q [auth 4]
IPR022796Chlorophyll A-B binding proteinFamily
IA [auth 82],
O [auth 8]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IA [auth 82],
O [auth 8]
IPR022796Chlorophyll A-B binding proteinFamily
HA [auth 72],
N [auth 7]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
HA [auth 72],
N [auth 7]
IPR022796Chlorophyll A-B binding proteinFamily
FA [auth 12],
JA [auth Z2],
L [auth 1],
P [auth Z]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
FA [auth 12],
JA [auth Z2],
L [auth 1],
P [auth Z]
IPR022796Chlorophyll A-B binding proteinFamily
EA [auth K2],
K
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
EA [auth K2],
K
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
EA [auth K2],
K
IPR000549Photosystem I reaction center subunit V/PsaKFamily
EA [auth K2],
K
IPR017493Photosystem I reaction center subunit psaK, plantFamily
DA [auth L2],
J [auth L]
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
DA [auth L2],
J [auth L]
IPR022980Photosystem I, reaction centre subunit XIFamily
DA [auth L2],
J [auth L]
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
A,
U [auth A2]
IPR006243Photosystem I PsaAFamily
A,
U [auth A2]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
A,
U [auth A2]
IPR001280Photosystem I PsaA/PsaBFamily
A,
U [auth A2]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site