8AM5 | pdb_00008am5

RCII/PSI complex, class 3


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098522 3000736 SCOP2B (2022-06-29)
J [auth d]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8074480 3000951 SCOP2B (2022-06-29)
K [auth e]SCOP2B SuperfamilyElectron transport accessory proteins 8044474 3000325 SCOP2B (2022-06-29)
L [auth f]SCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8074438 3000813 SCOP2B (2022-06-29)
M [auth i]SCOP2B SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8074504 3000819 SCOP2B (2022-06-29)
N [auth j]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8074512 3000824 SCOP2B (2022-06-29)
P [auth l]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8087170 3000870 SCOP2B (2022-06-29)
Q [auth m]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8074450 3000829 SCOP2B (2022-06-29)
B [auth D]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8098320 3000736 SCOP2B (2022-06-29)
D [auth F]SCOP2B SuperfamilyCytochrome b559 subunits 8098318 3001602 SCOP2B (2022-06-29)
G [auth a]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074454 3000850 SCOP2B (2022-06-29)
H [auth b]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074462 3000850 SCOP2B (2022-06-29)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
P [auth l]1.20.1240.10 Mainly Alpha Up-down Bundle Photosystem 1 Reaction Centre Subunit Xi Chain: LCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
B [auth D]PF02531PsaD (PsaD)PsaD- Family
C [auth E]PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. Domain
C [auth E]PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
E [auth I]PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Photosystem II protein D1 2
J [auth d]Photosystem I reaction center subunit II-
K [auth e]Photosystem I reaction center subunit IV-
L [auth f]Photosystem I reaction center subunit III-
M [auth i]Photosystem I reaction center subunit VIII-
N [auth j]Photosystem I reaction center subunit IX-
O [auth k]Photosystem I reaction center subunit PsaK 1-
P [auth l]Photosystem I reaction center subunit XI-
Q [auth m]Photosystem I reaction center subunit XII-
B [auth D]Photosystem II D2 protein
C [auth E]Cytochrome b559 subunit alpha
D [auth F]Cytochrome b559 subunit beta
E [auth I]Photosystem II reaction center protein I-
F [auth S]Photosystem II assembly lipoprotein Ycf48-
G [auth a]Photosystem I P700 chlorophyll a apoprotein A1
H [auth b]Photosystem I P700 chlorophyll a apoprotein A2
I [auth c]Photosystem I iron-sulfur center

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
IPR005867Photosystem II protein D1Family
IPR000484Photosynthetic reaction centre, L/MFamily
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
IPR055266Photosystem II protein D1/D2Family
J [auth d]IPR003685Photosystem I PsaDFamily
J [auth d]IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
K [auth e]IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
K [auth e]IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
L [auth f]IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
L [auth f]IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
M [auth i]IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
M [auth i]IPR001302Photosystem I reaction centre subunit VIIIFamily
N [auth j]IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
N [auth j]IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
O [auth k]IPR037101Photosystem I reaction centre subunit PsaKHomologous Superfamily
O [auth k]IPR000549Photosystem I reaction center subunit V/PsaKFamily
O [auth k]IPR035982Photosystem I reaction centre subunit PsaK superfamilyHomologous Superfamily
O [auth k]IPR017492Photosystem I reaction center subunit PsaKFamily
P [auth l]IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
P [auth l]IPR022980Photosystem I, reaction centre subunit XIFamily
P [auth l]IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
Q [auth m]IPR010010Photosystem I PsaM, reaction centreFamily
Q [auth m]IPR037279Photosystem I PsaM, reaction centre superfamilyHomologous Superfamily
B [auth D]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
B [auth D]IPR005868Photosystem II D2Family
B [auth D]IPR000484Photosynthetic reaction centre, L/MFamily
B [auth D]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
B [auth D]IPR055266Photosystem II protein D1/D2Family
C [auth E]IPR013081Photosystem II cytochrome b559, N-terminalDomain
C [auth E]IPR006217Photosystem II cytochrome b559, alpha subunitFamily
C [auth E]IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
C [auth E]IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
C [auth E]IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
D [auth F]IPR006241Photosystem II cytochrome b559, beta subunitFamily
D [auth F]IPR013081Photosystem II cytochrome b559, N-terminalDomain
D [auth F]IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
E [auth I]IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
E [auth I]IPR003686Photosystem II PsbIFamily
F [auth S]IPR016705Photosynthesis system II assembly factor Ycf48/Hcf136Family
F [auth S]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
F [auth S]IPR028203Photosynthesis system II assembly factor Ycf48/Hcf136-like domainDomain
G [auth a]IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
G [auth a]IPR001280Photosystem I PsaA/PsaBFamily
G [auth a]IPR006243Photosystem I PsaAFamily
G [auth a]IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
H [auth b]IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
H [auth b]IPR001280Photosystem I PsaA/PsaBFamily
H [auth b]IPR006244Photosystem I PsaBFamily
H [auth b]IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
I [auth c]IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
I [auth c]IPR050157Photosystem I iron-sulfur centerFamily
I [auth c]IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
I [auth c]IPR017491Photosystem I protein PsaCFamily