8DQ1 | pdb_00008dq1

Quorum-sensing receptor RhlR bound to PqsE


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth B]SCOP2B SuperfamilyMetallo-hydrolase/oxidoreductase 8036183 3001057 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyMetallo-hydrolase/oxidoreductase 8036183 3001057 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth B]Lactamase_B_1e8dq1B1 A: a+b four layersX: Metallo-hydrolase/oxidoreductase (From Topology)H: Metallo-hydrolase/oxidoreductase (From Topology)T: Metallo-hydrolase/oxidoreductaseF: Lactamase_B_1ECOD (1.6)
C [auth A]Lactamase_B_1e8dq1A1 A: a+b four layersX: Metallo-hydrolase/oxidoreductase (From Topology)H: Metallo-hydrolase/oxidoreductase (From Topology)T: Metallo-hydrolase/oxidoreductaseF: Lactamase_B_1ECOD (1.6)
B [auth D]GerEe8dq1D1 A: alpha arraysX: HTHH: HTHT: tetra-helical, LuxR-likeF: GerEECOD (1.6)
B [auth D]Autoind_binde8dq1D2 A: a+b three layersX: Profilin-likeH: sensor domains (From Topology)T: sensor domainsF: Autoind_bindECOD (1.6)
A [auth C]GerEe8dq1C2 A: alpha arraysX: HTHH: HTHT: tetra-helical, LuxR-likeF: GerEECOD (1.6)
A [auth C]Autoind_binde8dq1C1 A: a+b three layersX: Profilin-likeH: sensor domains (From Topology)T: sensor domainsF: Autoind_bindECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth A],
D [auth B]
PF00753Metallo-beta-lactamase superfamily (Lactamase_B)Metallo-beta-lactamase superfamilyDomain
A [auth C],
B [auth D]
PF03472Autoinducer binding domain (Autoind_bind)Autoinducer binding domainThis domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules (N-Acyl homoserine lactones, chlorolactone and rosmarinic acid) (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 20 ...This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules (N-Acyl homoserine lactones, chlorolactone and rosmarinic acid) (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Domain
A [auth C],
B [auth D]
PF00196Bacterial regulatory proteins, luxR family (GerE)Bacterial regulatory proteins, luxR familyDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth J]DNA (5'-D(*CP*TP*GP*TP*GP*CP*AP*GP*TP*CP*TP*GP*GP*CP*AP*GP*GP*T)-3')---
E [auth I]DNA (5'-D(*AP*CP*CP*TP*GP*CP*CP*AP*GP*AP*CP*TP*GP*CP*AP*CP*AP*G)-3')---
C [auth A],
D [auth B]
2-aminobenzoylacetyl-CoA thioesterase -
A [auth C],
B [auth D]
RhlR protein