8H7A | pdb_00008h7a

Crystal structure of the dimer form KAT6A WH domain with its bound double stranded DNA

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	F_UNCLASSIFIED	e8h7aF1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: F_UNCLASSIFIED	ECOD (1.6)
E	F_UNCLASSIFIED	e8h7aE1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: F_UNCLASSIFIED	ECOD (1.6)
B	F_UNCLASSIFIED	e8h7aB1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: F_UNCLASSIFIED	ECOD (1.6)
A	F_UNCLASSIFIED	e8h7aA1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, E, F	PF21524	SAM domain-containing protein 1, WH domain (SAMD1_WH)	SAM domain-containing protein 1, WH domain	SAM domain-containing protein 1 (SAMD1, also known as Atherin) is an unmethylated CpG island (CGI)-binding protein that acts as a repressive chromatin regulator. It consists of a C-terminal SAM domain (Pfam:PF00536), a central unstructured region and ...	SAM domain-containing protein 1 (SAMD1, also known as Atherin) is an unmethylated CpG island (CGI)-binding protein that acts as a repressive chromatin regulator. It consists of a C-terminal SAM domain (Pfam:PF00536), a central unstructured region and an atypical winged-helix N-terminal domain that directly recognizes unmethylated CpG-containing DNA. This domain has also been found in the transcriptional regulators KAT6A, KAT6B, and ZMYND11 which were grouped together as a novel class of WH domains. This entry represents this novel group of WH domains [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D, G	DNA (5'-D(GPGPTPCPCPGPTPCPGPGPAPCP*C)-3')	-	-	-
C, H	DNA (5'-D(GPGPTPCPCPGPAPCPGPGPAPCP*C)-3')	-	-	-
A, B, E, F	Histone acetyltransferase KAT6A	protein-lysine-acetyltransferase activity histone H4K12 acetyltransferase activity catalytic activity, acting on a protein protein N-acetyltransferase activity acyltransferase activity N-acetyltransferase activity histone H4 acetyltransferase activity transferase activity protein N-acyltransferase activity histone acetyltransferase activity acetyltransferase activity histone modifying activity acyltransferase activity, transferring groups other than amino-acyl groups catalytic activity protein-lysine-acetyltransferase activity histone H4K12 acetyltransferase activity catalytic activity, acting on a protein protein N-acetyltransferase activity acyltransferase activity N-acetyltransferase activity histone H4 acetyltransferase activity transferase activity protein N-acyltransferase activity histone acetyltransferase activity acetyltransferase activity histone modifying activity acyltransferase activity, transferring groups other than amino-acyl groups catalytic activity N-acyltransferase activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity histone H4K8 acetyltransferase activity chromatin binding binding transcription coactivator activity histone H3 acetyltransferase activity histone H3K14 acetyltransferase activity DNA binding nucleic acid binding transcription factor binding protein binding DNA-binding transcription factor binding histone H4K5 acetyltransferase activity histone H4K16 acetyltransferase activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of gene expression positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process cellular component organization organelle organization chromosome organization cellular component organization or biogenesis developmental process multicellular organismal process regulation of multicellular organismal development regulation of developmental process cellular developmental process hemopoiesis cell development regulation of cell differentiation regulation of cell development multicellular organism development cell differentiation immune system process anatomical structure development regulation of hemopoiesis regulation of immune system process regulation of multicellular organismal process cellular response to stimulus cellular response to stress response to stimulus response to stress cellular senescence protein-containing complex organization protein-DNA complex assembly protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling nucleosome assembly nucleosome organization protein acetylation macromolecule modification protein metabolic process protein modification process protein acylation positive regulation of DNA-templated transcription positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of signaling signaling regulation of signal transduction signal transduction by p53 class mediator intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus regulation of signal transduction by p53 class mediator regulation of cell communication signal transduction transcription by RNA polymerase II regulation of transcription by RNA polymerase II myeloid cell differentiation	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen nuclear speck ribonucleoprotein granule nuclear body nucleoplasm supramolecular complex nuclear ribonucleoprotein granule cytoplasm cytosol protein-containing complex protein-DNA complex nucleosome chromatin chromosome catalytic complex MOZ/MORF histone acetyltransferase complex transferase complex H3 histone acetyltransferase complex histone acetyltransferase complex acetyltransferase complex protein acetyltransferase complex intracellular protein-containing complex PML body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, E, F	IPR001965	Zinc finger, PHD-type	Domain
A, B, E, F	IPR002717	Histone acetyltransferase domain, MYST-type	Domain
A, B, E, F	IPR019787	Zinc finger, PHD-finger	Domain
A, B, E, F	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
A, B, E, F	IPR048589	SAM domain-containing protein 1-like, WH domain	Domain
A, B, E, F	IPR050603	MYST family histone acetyltransferases	Family
A, B, E, F	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, B, E, F	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A, B, E, F	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A, B, E, F	IPR016181	Acyl-CoA N-acyltransferase	Homologous Superfamily
A, B, E, F	IPR005818	Linker histone H1/H5, domain H15	Domain
A, B, E, F	IPR040706	MYST, zinc finger domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, E, F	Pharos: Q92794	medulloblastoma autosomal dominant intellectual disability-craniofacial anomalies-cardiac defects syndrome prostate cancer salivary gland adenoid cystic carcinoma intellectual disability medullomyoblastoma with myogenic differentiation adenoid cystic carcinoma melanotic medulloblastoma adult medulloblastoma childhood medulloblastoma MENTAL RETARDATION, AUTOSOMAL DOMINANT 32 acute myeloid leukemia with t(8;16)(p11;p13) translocation astrocytic tumor breast cancer craniosynostosis medulloblastoma autosomal dominant intellectual disability-craniofacial anomalies-cardiac defects syndrome prostate cancer salivary gland adenoid cystic carcinoma intellectual disability medullomyoblastoma with myogenic differentiation adenoid cystic carcinoma melanotic medulloblastoma adult medulloblastoma childhood medulloblastoma MENTAL RETARDATION, AUTOSOMAL DOMINANT 32 acute myeloid leukemia with t(8;16)(p11;p13) translocation astrocytic tumor breast cancer craniosynostosis malignant mesothelioma ovarian cancer tuberculosis atypical teratoid rhabdoid tumor cancer desmoplastic/nodular medulloblastoma large cell medulloblastoma malignant pancreatic neoplasm pancreatic ductal adenocarcinoma psoriasis glioblastoma lung cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.