8IKA | pdb_00008ika

Cryo-EM structure of the encapsulin shell from Mycobacterium tuberculosis

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth A1]	F_UNCLASSIFIED	e8ikaA11	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
AA [auth AR]	F_UNCLASSIFIED	e8ikaAR1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
AB [auth Ar]	F_UNCLASSIFIED	e8ikaAr1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
B [auth A2]	F_UNCLASSIFIED	e8ikaA21	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
BA [auth AS]	F_UNCLASSIFIED	e8ikaAS1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
BB [auth As]	F_UNCLASSIFIED	e8ikaAs1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
C [auth A3]	F_UNCLASSIFIED	e8ikaA31	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
CA [auth AT]	F_UNCLASSIFIED	e8ikaAT1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
CB [auth At]	F_UNCLASSIFIED	e8ikaAt1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
D [auth A4]	F_UNCLASSIFIED	e8ikaA41	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
DA [auth AU]	F_UNCLASSIFIED	e8ikaAU1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
DB [auth Au]	F_UNCLASSIFIED	e8ikaAu1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
E [auth A5]	F_UNCLASSIFIED	e8ikaA51	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
EA [auth AV]	F_UNCLASSIFIED	e8ikaAV1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
EB [auth Av]	F_UNCLASSIFIED	e8ikaAv1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
F [auth A6]	F_UNCLASSIFIED	e8ikaA61	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
FA [auth AW]	F_UNCLASSIFIED	e8ikaAW1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
FB [auth Aw]	F_UNCLASSIFIED	e8ikaAw1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
G [auth A7]	F_UNCLASSIFIED	e8ikaA71	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
GA [auth AX]	F_UNCLASSIFIED	e8ikaAX1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
GB [auth Ax]	F_UNCLASSIFIED	e8ikaAx1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
H [auth A8]	F_UNCLASSIFIED	e8ikaA81	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
HA [auth AY]	F_UNCLASSIFIED	e8ikaAY1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
HB [auth Ay]	F_UNCLASSIFIED	e8ikaAy1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
I [auth A9]	F_UNCLASSIFIED	e8ikaA91	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
IA [auth AZ]	F_UNCLASSIFIED	e8ikaAZ1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
J [auth AA]	F_UNCLASSIFIED	e8ikaAA1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
JA [auth Aa]	F_UNCLASSIFIED	e8ikaAa1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
K [auth AB]	F_UNCLASSIFIED	e8ikaAB1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
KA [auth Ab]	F_UNCLASSIFIED	e8ikaAb1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
L [auth AC]	F_UNCLASSIFIED	e8ikaAC1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
LA [auth Ac]	F_UNCLASSIFIED	e8ikaAc1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
M [auth AD]	F_UNCLASSIFIED	e8ikaAD1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
MA [auth Ad]	F_UNCLASSIFIED	e8ikaAd1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
N [auth AE]	F_UNCLASSIFIED	e8ikaAE1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
NA [auth Ae]	F_UNCLASSIFIED	e8ikaAe1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
O [auth AF]	F_UNCLASSIFIED	e8ikaAF1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
OA [auth Af]	F_UNCLASSIFIED	e8ikaAf1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
P [auth AG]	F_UNCLASSIFIED	e8ikaAG1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
PA [auth Ag]	F_UNCLASSIFIED	e8ikaAg1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
Q [auth AH]	F_UNCLASSIFIED	e8ikaAH1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
QA [auth Ah]	F_UNCLASSIFIED	e8ikaAh1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
R [auth AI]	F_UNCLASSIFIED	e8ikaAI1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
RA [auth Ai]	F_UNCLASSIFIED	e8ikaAi1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
S [auth AJ]	F_UNCLASSIFIED	e8ikaAJ1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
SA [auth Aj]	F_UNCLASSIFIED	e8ikaAj1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
T [auth AK]	F_UNCLASSIFIED	e8ikaAK1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
TA [auth Ak]	F_UNCLASSIFIED	e8ikaAk1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
U [auth AL]	F_UNCLASSIFIED	e8ikaAL1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
UA [auth Al]	F_UNCLASSIFIED	e8ikaAl1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
V [auth AM]	F_UNCLASSIFIED	e8ikaAM1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
VA [auth Am]	F_UNCLASSIFIED	e8ikaAm1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
W [auth AN]	F_UNCLASSIFIED	e8ikaAN1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
WA [auth An]	F_UNCLASSIFIED	e8ikaAn1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
X [auth AO]	F_UNCLASSIFIED	e8ikaAO1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
XA [auth Ao]	F_UNCLASSIFIED	e8ikaAo1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
Y [auth AP]	F_UNCLASSIFIED	e8ikaAP1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
YA [auth Ap]	F_UNCLASSIFIED	e8ikaAp1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
Z [auth AQ]	F_UNCLASSIFIED	e8ikaAQ1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)
ZA [auth Aq]	F_UNCLASSIFIED	e8ikaAq1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth A1], AA [auth AR], AB [auth Ar], B [auth A2], BA [auth AS], A [auth A1], AA [auth AR], AB [auth Ar], B [auth A2], BA [auth AS], BB [auth As], C [auth A3], CA [auth AT], CB [auth At], D [auth A4], DA [auth AU], DB [auth Au], E [auth A5], EA [auth AV], EB [auth Av], F [auth A6], FA [auth AW], FB [auth Aw], G [auth A7], GA [auth AX], GB [auth Ax], H [auth A8], HA [auth AY], HB [auth Ay], I [auth A9], IA [auth AZ], J [auth AA], JA [auth Aa], K [auth AB], KA [auth Ab], L [auth AC], LA [auth Ac], M [auth AD], MA [auth Ad], N [auth AE], NA [auth Ae], O [auth AF], OA [auth Af], P [auth AG], PA [auth Ag], Q [auth AH], QA [auth Ah], R [auth AI], RA [auth Ai], S [auth AJ], SA [auth Aj], T [auth AK], TA [auth Ak], U [auth AL], UA [auth Al], V [auth AM], VA [auth Am], W [auth AN], WA [auth An], X [auth AO], XA [auth Ao], Y [auth AP], YA [auth Ap], Z [auth AQ], ZA [auth Aq]	PF04454	Encapsulating protein for peroxidase (Linocin_M18)	Encapsulating protein for peroxidase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth A1], AA [auth AR], AB [auth Ar], B [auth A2], BA [auth AS], A [auth A1], AA [auth AR], AB [auth Ar], B [auth A2], BA [auth AS], BB [auth As], C [auth A3], CA [auth AT], CB [auth At], D [auth A4], DA [auth AU], DB [auth Au], E [auth A5], EA [auth AV], EB [auth Av], F [auth A6], FA [auth AW], FB [auth Aw], G [auth A7], GA [auth AX], GB [auth Ax], H [auth A8], HA [auth AY], HB [auth Ay], I [auth A9], IA [auth AZ], J [auth AA], JA [auth Aa], K [auth AB], KA [auth Ab], L [auth AC], LA [auth Ac], M [auth AD], MA [auth Ad], N [auth AE], NA [auth Ae], O [auth AF], OA [auth Af], P [auth AG], PA [auth Ag], Q [auth AH], QA [auth Ah], R [auth AI], RA [auth Ai], S [auth AJ], SA [auth Aj], T [auth AK], TA [auth Ak], U [auth AL], UA [auth Al], V [auth AM], VA [auth Am], W [auth AN], WA [auth An], X [auth AO], XA [auth Ao], Y [auth AP], YA [auth Ap], Z [auth AQ], ZA [auth Aq]	Type 1 encapsulin shell protein	-	-	cell periphery cellular anatomical structure plasma membrane membrane extracellular region intracellular organelle intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle encapsulin nanocompartment

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth A1], AA [auth AR], AB [auth Ar], B [auth A2], BA [auth AS], A [auth A1], AA [auth AR], AB [auth Ar], B [auth A2], BA [auth AS], BB [auth As], C [auth A3], CA [auth AT], CB [auth At], D [auth A4], DA [auth AU], DB [auth Au], E [auth A5], EA [auth AV], EB [auth Av], F [auth A6], FA [auth AW], FB [auth Aw], G [auth A7], GA [auth AX], GB [auth Ax], H [auth A8], HA [auth AY], HB [auth Ay], I [auth A9], IA [auth AZ], J [auth AA], JA [auth Aa], K [auth AB], KA [auth Ab], L [auth AC], LA [auth Ac], M [auth AD], MA [auth Ad], N [auth AE], NA [auth Ae], O [auth AF], OA [auth Af], P [auth AG], PA [auth Ag], Q [auth AH], QA [auth Ah], R [auth AI], RA [auth Ai], S [auth AJ], SA [auth Aj], T [auth AK], TA [auth Ak], U [auth AL], UA [auth Al], V [auth AM], VA [auth Am], W [auth AN], WA [auth An], X [auth AO], XA [auth Ao], Y [auth AP], YA [auth Ap], Z [auth AQ], ZA [auth Aq]	IPR007544	Type 1 encapsulin shell protein	Family
A [auth A1], AA [auth AR], AB [auth Ar], B [auth A2], BA [auth AS], A [auth A1], AA [auth AR], AB [auth Ar], B [auth A2], BA [auth AS], BB [auth As], C [auth A3], CA [auth AT], CB [auth At], D [auth A4], DA [auth AU], DB [auth Au], E [auth A5], EA [auth AV], EB [auth Av], F [auth A6], FA [auth AW], FB [auth Aw], G [auth A7], GA [auth AX], GB [auth Ax], H [auth A8], HA [auth AY], HB [auth Ay], I [auth A9], IA [auth AZ], J [auth AA], JA [auth Aa], K [auth AB], KA [auth Ab], L [auth AC], LA [auth Ac], M [auth AD], MA [auth Ad], N [auth AE], NA [auth Ae], O [auth AF], OA [auth Af], P [auth AG], PA [auth Ag], Q [auth AH], QA [auth Ah], R [auth AI], RA [auth Ai], S [auth AJ], SA [auth Aj], T [auth AK], TA [auth Ak], U [auth AL], UA [auth Al], V [auth AM], VA [auth Am], W [auth AN], WA [auth An], X [auth AO], XA [auth Ao], Y [auth AP], YA [auth Ap], Z [auth AQ], ZA [auth Aq]	IPR051429	Encapsulin nanocompartment	Family