Annotations: 8ILB

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035453	3001258	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043701	3000552	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043701	3000552	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035453	3001258	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043701	3000552	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035453	3001258	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035453	3001258	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043701	3000552	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035453	3001258	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043701	3000552	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035453	3001258	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043701	3000552	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043701	3000552	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035453	3001258	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035453	3001258	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043701	3000552	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	DnaJ/Hsp40 cysteine-rich domain-like	8102247	3001550	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	DnaJ/Hsp40 cysteine-rich domain-like	8102247	3001550	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	DnaJ/Hsp40 cysteine-rich domain-like	8102247	3001550	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	DnaJ/Hsp40 cysteine-rich domain-like	8102247	3001550	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	DnaJ/Hsp40 cysteine-rich domain-like	8102247	3001550	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	DnaJ/Hsp40 cysteine-rich domain-like	8102247	3001550	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	DnaJ/Hsp40 cysteine-rich domain-like	8102247	3001550	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	DnaJ/Hsp40 cysteine-rich domain-like	8102247	3001550	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, J A, B, C, D, J, K, L, M	PF02788	Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)	Ribulose bisphosphate carboxylase large chain, N-terminal domain	The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.	Domain
A, B, C, D, J A, B, C, D, J, K, L, M	PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)	Ribulose bisphosphate carboxylase large chain, catalytic domain	The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.	Domain
E, N	PF18579	Rubisco accumulation factor 1 helix turn helix domain (Raf1_HTH)	Rubisco accumulation factor 1 helix turn helix domain	This is helix turn helix domain found in alpha helical region of Rubisco accumulation factor1 (Raf1). Raf1 from Arabidopsis thaliana consists of an N-terminal alpha-domain, a flexible linker segment and a C-terminal beta-sheet domain that mediates di ...	This is helix turn helix domain found in alpha helical region of Rubisco accumulation factor1 (Raf1). Raf1 from Arabidopsis thaliana consists of an N-terminal alpha-domain, a flexible linker segment and a C-terminal beta-sheet domain that mediates dimerization. The alpha-domains mediate the majority of functionally important contacts with RbcL (Rubisco large subunits) by bracketing each RbcL dimer at the top and bottom. The alpha-domain alone is essentially inactive [1].	Domain
E, N	PF18578	Rubisco accumulation factor 1 alpha helical domain (Raf1_N)	Rubisco accumulation factor 1 alpha helical domain	This is the N-terminal alpha helical domain found in Rubisco accumulation factor1 (Raf1). Raf1 from Arabidopsis thaliana consists of an N-terminal alpha-domain, a flexible linker segment and a C-terminal beta-sheet domain that mediates dimerization. ...	This is the N-terminal alpha helical domain found in Rubisco accumulation factor1 (Raf1). Raf1 from Arabidopsis thaliana consists of an N-terminal alpha-domain, a flexible linker segment and a C-terminal beta-sheet domain that mediates dimerization. The alpha-domains mediate the majority of functionally important contacts with RbcL (Rubisco large subunits) by bracketing each RbcL dimer at the top and bottom. The alpha-domain alone is essentially inactive [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, J A, B, C, D, J, K, L, M	Ribulose bisphosphate carboxylase large chain	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity monooxygenase activity oxidoreductase activity	metabolic compound salvage biosynthetic process metabolic process cellular process photorespiration carbohydrate metabolic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process carbon fixation	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle carboxysome membraneless organelle intracellular membraneless organelle
E, N	Rubisco accumulation factor 1.2, chloroplastic	-	cellular component organization cellular component biogenesis cellular component assembly ribulose bisphosphate carboxylase complex assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle plastid organelle intracellular membrane-bounded organelle chloroplast plastid stroma chloroplast stroma
F, G, H, I, O F, G, H, I, O, P, Q, R	Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic	protein folding chaperone cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	cellular component organization cellular component biogenesis cellular component assembly ribulose bisphosphate carboxylase complex assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex protein folding chaperone complex intracellular protein-containing complex membrane-bounded organelle intracellular organelle plastid organelle intracellular membrane-bounded organelle chloroplast plastid stroma cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex protein folding chaperone complex intracellular protein-containing complex membrane-bounded organelle intracellular organelle plastid organelle intracellular membrane-bounded organelle chloroplast plastid stroma chloroplast stroma

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, J A, B, C, D, J, K, L, M	IPR020888	Ribulose bisphosphate carboxylase large subunit, type I	Family
A, B, C, D, J A, B, C, D, J, K, L, M	IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D, J A, B, C, D, J, K, L, M	IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	Active Site
A, B, C, D, J A, B, C, D, J, K, L, M	IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	Domain
A, B, C, D, J A, B, C, D, J, K, L, M	IPR033966	RuBisCO	Family
A, B, C, D, J A, B, C, D, J, K, L, M	IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	Domain
A, B, C, D, J A, B, C, D, J, K, L, M	IPR036422	RuBisCO large subunit, N-terminal domain superfamily	Homologous Superfamily
E, N	IPR037494	Rubisco accumulation factor 1	Family
E, N	IPR040858	Rubisco accumulation factor 1, C-terminal	Domain
E, N	IPR041358	Rubisco accumulation factor 1, alpha-helical domain	Domain
E, N	IPR040781	Rubisco accumulation factor 1, helix turn helix domain	Domain
F, G, H, I, O F, G, H, I, O, P, Q, R	IPR036410	Heat shock protein DnaJ, cysteine-rich domain superfamily	Homologous Superfamily

8ILB | pdb_00008ilb

The complexes of RbcL, AtRaf1 and AtBSD2 (LFB)

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

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The complexes of RbcL, AtRaf1 and AtBSD2 (LFB)

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

8ILB | pdb_00008ilb