8JD6 | pdb_00008jd6

Cryo-EM structure of Gi1-bound metabotropic glutamate receptor mGlu4


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth A]SCOP2B SuperfamilyRas-like P-loop GTPases 8056794 3002022 SCOP2B (2022-06-29)
F [auth A]SCOP2B SuperfamilyRas-like P-loop GTPases 8056794 3002022 SCOP2B (2022-06-29)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C [auth D]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth S],
B [auth R]
PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain
A [auth S],
B [auth R]
PF07562Nine Cysteines Domain of family 3 GPCR (NCD3G)Nine Cysteines Domain of family 3 GPCR- Family
A [auth S],
B [auth R]
PF000037 transmembrane sweet-taste receptor of 3 GCPR (7tm_3)7 transmembrane sweet-taste receptor of 3 GCPRThis is a domain of seven transmembrane regions that forms the C-terminus of some subclass 3 G-coupled-protein receptors. It is often associated with a downstream cysteine-rich linker domain, NCD3G Pfam:PF07562, which is the human sweet-taste recepto ...This is a domain of seven transmembrane regions that forms the C-terminus of some subclass 3 G-coupled-protein receptors. It is often associated with a downstream cysteine-rich linker domain, NCD3G Pfam:PF07562, which is the human sweet-taste receptor, and the N-terminal domain, ANF_receptor Pfam:PF01094. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness [1].
Domain
E [auth B]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
F [auth A]PF00503G-protein alpha subunit (G-alpha)G-protein alpha subunitG proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like ...G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site [3]. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA [3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth S],
B [auth R]
Metabotropic glutamate receptor 4
C [auth D]scFv---
D [auth C]Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
E [auth B]Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
F [auth A]Guanine nucleotide-binding protein G(i) subunit alpha-3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth S],
B [auth R]
IPR017978GPCR family 3, C-terminalDomain
A [auth S],
B [auth R]
IPR001786GPCR, family 3, metabotropic glutamate receptor 4Family
A [auth S],
B [auth R]
IPR017979GPCR, family 3, conserved siteConserved Site
A [auth S],
B [auth R]
IPR011500GPCR, family 3, nine cysteines domainDomain
A [auth S],
B [auth R]
IPR028082Periplasmic binding protein-like IHomologous Superfamily
A [auth S],
B [auth R]
IPR000337GPCR, family 3Family
A [auth S],
B [auth R]
IPR038550GPCR, family 3, nine cysteines domain superfamilyHomologous Superfamily
A [auth S],
B [auth R]
IPR000162GPCR, family 3, metabotropic glutamate receptorFamily
A [auth S],
B [auth R]
IPR001828Receptor, ligand binding regionDomain
A [auth S],
B [auth R]
IPR050726Metabotropic Glutamate ReceptorFamily
D [auth C]IPR001770G-protein, gamma subunitFamily
D [auth C]IPR015898G-protein, gamma subunit-like domainDomain
D [auth C]IPR036284G-protein gamma-like domain superfamilyHomologous Superfamily
E [auth B]IPR019775WD40 repeat, conserved siteConserved Site
E [auth B]IPR001632G-protein beta subunit, WD40 repeatsDomain
E [auth B]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
E [auth B]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E [auth B]IPR016346G-protein subunit beta 1-5Family
E [auth B]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
E [auth B]IPR001680WD40 repeatRepeat
F [auth A]IPR001019Guanine nucleotide binding protein (G-protein), alpha subunitFamily
F [auth A]IPR011025G protein alpha subunit, helical insertionHomologous Superfamily
F [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
F [auth A]IPR001408G-protein alpha subunit, group IFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth S],
B [auth R]
PharosQ14833
D [auth C]PharosP59768
E [auth B]PharosP62873
F [auth A]PharosP08754