8JZP | pdb_00008jzp

Structure of mouse C5a-human C5aR1-Go complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyG protein-coupled receptor-like 8091170 3000473 SCOP2B (2022-06-29)
D [auth F]SCOP2B SuperfamilyAnaphylotoxins (complement system) 8070211 3000387 SCOP2B (2022-06-29)
E [auth G]SCOP2B SuperfamilyTransducin (heterotrimeric G protein), gamma chain 8070798 3001771 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF000017 transmembrane receptor (rhodopsin family) (7tm_1)7 transmembrane receptor (rhodopsin family)This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GC ...This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins [1].
Domain
PF00503G-protein alpha subunit (G-alpha)G-protein alpha subunitG proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like ...G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site [3]. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA [3].
Domain
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
D [auth F]PF01821Anaphylotoxin-like domain (ANATO)Anaphylotoxin-like domainC3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to a three-fold repeat in fibulins. ...C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to a three-fold repeat in fibulins.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C5a anaphylatoxin chemotactic receptor 1
Guanine nucleotide-binding protein G(o) subunit alpha
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
D [auth F]C5a anaphylatoxin
E [auth G]Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
F [auth H]Antibody fragment ScFv16---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR002234Anaphylatoxin chemotactic receptor, C3a/C5a1/C5a2Family
IPR000276G protein-coupled receptor, rhodopsin-likeFamily
IPR017452GPCR, rhodopsin-like, 7TMDomain
IPR000826Formyl peptide receptor-relatedFamily
IPR001019Guanine nucleotide binding protein (G-protein), alpha subunitFamily
IPR011025G protein alpha subunit, helical insertionHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR001408G-protein alpha subunit, group IFamily
IPR019775WD40 repeat, conserved siteConserved Site
IPR001632G-protein beta subunit, WD40 repeatsDomain
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR016346G-protein subunit beta 1-5Family
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR001680WD40 repeatRepeat
D [auth F]IPR009048Alpha-macroglobulin, receptor-bindingDomain
D [auth F]IPR041555Macroglobulin domain MG3Domain
D [auth F]IPR001599Alpha-2-macroglobulinDomain
D [auth F]IPR048843Complement component 5, CUB domainDomain
D [auth F]IPR018081Anaphylatoxin, complement systemHomologous Superfamily
D [auth F]IPR018933Netrin module, non-TIMP typeDomain
D [auth F]IPR041425Complement C3/4/5, macroglobulin domain MG1Domain
D [auth F]IPR011625Alpha-2-macroglobulin, bait region domainDomain
D [auth F]IPR001134Netrin domainDomain
D [auth F]IPR008993Tissue inhibitor of metalloproteinases-like, OB-foldHomologous Superfamily
D [auth F]IPR011626Alpha-macroglobulin-like, TED domainDomain
D [auth F]IPR000020Anaphylatoxin/fibulinDomain
D [auth F]IPR036595Alpha-macroglobulin, receptor-binding domain superfamilyHomologous Superfamily
D [auth F]IPR002890Macroglobulin domainDomain
D [auth F]IPR013783Immunoglobulin-like foldHomologous Superfamily
D [auth F]IPR050473Alpha-2-macroglobulin/Complement systemFamily
D [auth F]IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidHomologous Superfamily
D [auth F]IPR040839Macroglobulin domain MG4Domain
E [auth G]IPR001770G-protein, gamma subunitFamily
E [auth G]IPR015898G-protein, gamma subunit-like domainDomain
E [auth G]IPR036284G-protein gamma-like domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP21730
PharosP09471
PharosP62873
E [auth G]PharosP59768

Membrane Protein Annotation: PDBTM PDBTM Database Homepage