8SYL | pdb_00008syl

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth i]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082661 3000100 SCOP2B (2022-06-29)
H [auth h]SCOP2B SuperfamilyRibosomal protein S8 8079059 3000709 SCOP2B (2022-06-29)
G [auth g]SCOP2B SuperfamilyRibosomal protein S7 8077979 3000799 SCOP2B (2022-06-29)
F [auth f]SCOP2B SuperfamilyRibosomal protein S6 8066495 3001323 SCOP2B (2022-06-29)
DB [auth 8]SCOP2B SuperfamilyRibosomal protein L36 8035391 3001346 SCOP2B (2022-06-29)
CB [auth 7]SCOP2B SuperfamilyL35p-like 8035388 3000790 SCOP2B (2022-06-29)
AB [auth 5]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096362 3001320 SCOP2B (2022-06-29)
ZA [auth 4]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
YA [auth 3]SCOP2B SuperfamilyL28p-like 8032740 3001966 SCOP2B (2022-06-29)
XA [auth 2]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
WA [auth 1]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
VA [auth Z]SCOP2B SuperfamilyL28p-like 8035424 3001966 SCOP2B (2022-06-29)
UA [auth Y]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
TA [auth X]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
SA [auth W]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
RA [auth V]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
QA [auth U]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
PA [auth T]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
OA [auth S]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
D [auth d]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8083400 3001473 SCOP2B (2022-06-29)
NA [auth R]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
MA [auth Q]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
LA [auth P]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
KA [auth O]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8096366 3000884 SCOP2B (2022-06-29)
JA [auth N]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
IA [auth M]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
HA [auth L]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
FA [auth G]SCOP2B SuperfamilyRibosomal protein L6 8035397 3000724 SCOP2B (2022-06-29)
FA [auth G]SCOP2B SuperfamilyRibosomal protein L6 8035398 3000724 SCOP2B (2022-06-29)
EA [auth F]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
DA [auth E]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
CA [auth D]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
BA [auth C]SCOP2B SuperfamilyNucleic acid-binding proteins 8035394 3000135 SCOP2B (2022-06-29)
BA [auth C]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8035393 3000334 SCOP2B (2022-06-29)
U [auth u]SCOP2B SuperfamilyRibosomal protein S21 8053090 3002159 SCOP2B (2022-06-29)
B [auth b]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063838 3001397 SCOP2B (2022-06-29)
S [auth s]SCOP2B SuperfamilyRibosomal protein S19 8103915 3000686 SCOP2B (2022-06-29)
Q [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins 8059276 3000135 SCOP2B (2022-06-29)
P [auth p]SCOP2B SuperfamilyRibosomal protein S16 8106547 3000680 SCOP2B (2022-06-29)
O [auth o]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8032375 3001284 SCOP2B (2022-06-29)
N [auth n]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052568 3000068 SCOP2B (2022-06-29)
M [auth m]SCOP2B SuperfamilyS13-like H2TH domain 8098358 3000053 SCOP2B (2022-06-29)
L [auth l]SCOP2B SuperfamilyNucleic acid-binding proteins 8106545 3000135 SCOP2B (2022-06-29)
K [auth k]SCOP2B SuperfamilyTranslational machinery components 8035368 3000571 SCOP2B (2022-06-29)
J [auth j]SCOP2B SuperfamilyRibosomal protein S10 8102681 3001336 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
DB [auth 8]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
CB [auth 7]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
BB [auth 6]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
AB [auth 5]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
ZA [auth 4]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
YA [auth 3]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
XA [auth 2]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
WA [auth 1]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
VA [auth Z]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
UA [auth Y]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
TA [auth X]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
SA [auth W]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
SA [auth W]PF00467KOW motif (KOW)KOW motif- Family
RA [auth V]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
QA [auth U]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
QA [auth U]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
PA [auth T]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
PA [auth T]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
OA [auth S]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
OA [auth S]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
NA [auth R]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
MA [auth Q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
LA [auth P]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
LA [auth P]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
KA [auth O]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
KA [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
JA [auth N]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
JA [auth N]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
IA [auth M]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
IA [auth M]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
HA [auth L]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
HA [auth L]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
GA [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
GA [auth H]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
FA [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
EA [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
EA [auth F]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
EA [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
DA [auth E]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
DA [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
DA [auth E]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
CA [auth D]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
CA [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
CA [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
BA [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
BA [auth C]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
BA [auth C]PF07650KH domain (KH_2)KH domainDomain
BA [auth C]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
AA [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth i]30S ribosomal protein S9
H [auth h]30S ribosomal protein S8
G [auth g]30S ribosomal protein S7
F [auth f]30S ribosomal protein S6
DB [auth 8]50S ribosomal protein L36
CB [auth 7]50S ribosomal protein L35
BB [auth 6]50S ribosomal protein L34
AB [auth 5]50S ribosomal protein L33
ZA [auth 4]50S ribosomal protein L32
YA [auth 3]50S ribosomal protein L31
E [auth e]30S ribosomal protein S5
XA [auth 2]50S ribosomal protein L30
WA [auth 1]50S ribosomal protein L29
VA [auth Z]50S ribosomal protein L28
UA [auth Y]50S ribosomal protein L27
TA [auth X]50S ribosomal protein L25
SA [auth W]50S ribosomal protein L24
RA [auth V]50S ribosomal protein L23
QA [auth U]50S ribosomal protein L22
PA [auth T]Ribosomal protein L21
OA [auth S]50S ribosomal protein L20
D [auth d]30S ribosomal protein S4
NA [auth R]50S ribosomal protein L19
MA [auth Q]50S ribosomal protein L18
LA [auth P]50S ribosomal protein L17
KA [auth O]50S ribosomal protein L16
JA [auth N]50S ribosomal protein L15
IA [auth M]50S ribosomal protein L14
HA [auth L]50S ribosomal protein L13
GA [auth H]50S ribosomal protein L9
FA [auth G]50S ribosomal protein L6
EA [auth F]50S ribosomal protein L5
C [auth c]30S ribosomal protein S3
DA [auth E]50S ribosomal protein L4
CA [auth D]50S ribosomal protein L3
BA [auth C]50S ribosomal protein L2
AA [auth B]5S Ribosomal RNA---
Z [auth A]23S Ribosomal RNA---
Y [auth v]M-F-Stop mRNA---
W [auth x]P-site initiator tRNA---
V [auth w],
X [auth y]
phenylalanine tRNA---
U [auth u]30S ribosomal protein S21
T [auth t]30S ribosomal protein S20
B [auth b]30S ribosomal protein S2
S [auth s]30S ribosomal protein S19
R [auth r]30S ribosomal protein S18
Q [auth q]30S ribosomal protein S17
P [auth p]30S ribosomal protein S16
O [auth o]30S ribosomal protein S15
N [auth n]30S ribosomal protein S14
M [auth m]30S ribosomal protein S13
L [auth l]30S ribosomal protein S12
K [auth k]30S ribosomal protein S11
J [auth j]30S ribosomal protein S10
A [auth a]16S Ribosomal RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
I [auth i]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
I [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
I [auth i]IPR000754Small ribosomal subunit protein uS9Family
I [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
H [auth h]IPR000630Small ribosomal subunit protein uS8Family
H [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
H [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
G [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth g]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
G [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth g]IPR000235Small ribosomal subunit protein uS7Family
G [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain
F [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
F [auth f]IPR000529Small ribosomal subunit protein bS6Family
F [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
DB [auth 8]IPR000473Large ribosomal subunit protein bL36Family
DB [auth 8]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
CB [auth 7]IPR021137Large ribosomal subunit protein bL35-likeFamily
CB [auth 7]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
CB [auth 7]IPR001706Large ribosomal subunit protein bL35Family
CB [auth 7]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
BB [auth 6]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
BB [auth 6]IPR000271Large ribosomal subunit protein bL34Family
AB [auth 5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AB [auth 5]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
AB [auth 5]IPR001705Large ribosomal subunit protein bL33Family
AB [auth 5]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
ZA [auth 4]IPR002677Large ribosomal subunit protein bL32Family
ZA [auth 4]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
ZA [auth 4]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
YA [auth 3]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
YA [auth 3]IPR027491Large ribosomal subunit protein bL31 type AFamily
YA [auth 3]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
YA [auth 3]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
E [auth e]IPR000851Small ribosomal subunit protein uS5Family
E [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth e]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
E [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
XA [auth 2]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
XA [auth 2]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
XA [auth 2]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
XA [auth 2]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
WA [auth 1]IPR050063Universal ribosomal protein uL29Family
WA [auth 1]IPR001854Large ribosomal subunit protein uL29Family
WA [auth 1]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
WA [auth 1]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
VA [auth Z]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
VA [auth Z]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
VA [auth Z]IPR026569Large ribosomal subunit protein bL28Family
VA [auth Z]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
UA [auth Y]IPR001684Large ribosomal subunit protein bL27Family
UA [auth Y]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
TA [auth X]IPR020055Ribosomal protein bL25, short-formFamily
TA [auth X]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
TA [auth X]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
TA [auth X]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
TA [auth X]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
SA [auth W]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
SA [auth W]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
SA [auth W]IPR003256Large ribosomal subunit protein uL24Family
SA [auth W]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
SA [auth W]IPR005824KOWDomain
SA [auth W]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
RA [auth V]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
RA [auth V]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
RA [auth V]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
RA [auth V]IPR013025Large ribosomal subunit protein uL23-likeFamily
QA [auth U]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
QA [auth U]IPR001063Large ribosomal subunit protein uL22Family
QA [auth U]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
QA [auth U]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
QA [auth U]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
PA [auth T]IPR028909Large ribosomal subunit protein bL21-likeFamily
PA [auth T]IPR001787Large ribosomal subunit protein bL21Family
PA [auth T]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
PA [auth T]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
OA [auth S]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
OA [auth S]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
OA [auth S]IPR005813Large ribosomal subunit protein bL20Family
D [auth d]IPR002942RNA-binding S4 domainDomain
D [auth d]IPR022801Small ribosomal subunit protein uS4Family
D [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
D [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
D [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
D [auth d]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
NA [auth R]IPR001857Large ribosomal subunit protein bL19Family
NA [auth R]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
NA [auth R]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
NA [auth R]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
MA [auth Q]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
MA [auth Q]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
LA [auth P]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
LA [auth P]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
LA [auth P]IPR000456Large ribosomal subunit protein bL17Family
KA [auth O]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
KA [auth O]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
KA [auth O]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
KA [auth O]IPR016180Large ribosomal subunit protein uL16 domainDomain
KA [auth O]IPR047873Large ribosomal subunit protein uL16Family
JA [auth N]IPR021131Large ribosomal subunit protein uL15/eL18Domain
JA [auth N]IPR030878Large ribosomal subunit protein uL15Family
JA [auth N]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
JA [auth N]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
JA [auth N]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
IA [auth M]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
IA [auth M]IPR000218Large ribosomal subunit protein uL14Family
IA [auth M]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
IA [auth M]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
HA [auth L]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
HA [auth L]IPR005822Large ribosomal subunit protein uL13Family
HA [auth L]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
HA [auth L]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
GA [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
GA [auth H]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
GA [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
GA [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
GA [auth H]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
GA [auth H]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
GA [auth H]IPR000244Large ribosomal subunit protein bL9Family
FA [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
FA [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
FA [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
FA [auth G]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
FA [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
EA [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
EA [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
EA [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
EA [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
EA [auth F]IPR002132Large ribosomal subunit protein uL5Family
EA [auth F]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
C [auth c]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
C [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
C [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
C [auth c]IPR004087K Homology domainDomain
C [auth c]IPR004044K Homology domain, type 2Domain
C [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
C [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
C [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
DA [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
DA [auth E]IPR002136Large ribosomal subunit protein uL4Family
DA [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
CA [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
CA [auth D]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
CA [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
CA [auth D]IPR000597Large ribosomal subunit protein uL3Family
BA [auth C]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
BA [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
BA [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
BA [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BA [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
BA [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
BA [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
BA [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
BA [auth C]IPR002171Large ribosomal subunit protein uL2Family
U [auth u]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
U [auth u]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
U [auth u]IPR001911Small ribosomal subunit protein bS21Family
T [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
T [auth t]IPR002583Small ribosomal subunit protein bS20Family
B [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth b]IPR001865Small ribosomal subunit protein uS2Family
S [auth s]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
S [auth s]IPR002222Small ribosomal subunit protein uS19Family
S [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
S [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
R [auth r]IPR001648Small ribosomal subunit protein bS18Family
R [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
R [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
Q [auth q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
Q [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
Q [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth q]IPR000266Small ribosomal subunit protein uS17Family
P [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
P [auth p]IPR000307Small ribosomal subunit protein bS16Family
P [auth p]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
O [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
O [auth o]IPR000589Small ribosomal subunit protein uS15Family
O [auth o]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
N [auth n]IPR001209Small ribosomal subunit protein uS14Family
N [auth n]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
N [auth n]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
M [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
M [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
M [auth m]IPR001892Small ribosomal subunit protein uS13Family
M [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
M [auth m]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
L [auth l]IPR005679Ribosomal protein uS12, bacteriaFamily
L [auth l]IPR006032Small ribosomal subunit protein uS12Family
L [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth k]IPR001971Small ribosomal subunit protein uS11Family
K [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
K [auth k]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
K [auth k]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
J [auth j]IPR027486Small ribosomal subunit protein uS10 domainDomain
J [auth j]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
J [auth j]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
J [auth j]IPR001848Small ribosomal subunit protein uS10Family

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
KA [auth O]4D4 Parent Component: ARG

KA [auth O]MS6
CA [auth D]MEQ Parent Component: GLN

RESIDAA0071

PSI-MOD :  N5-methyl-L-glutamine MOD:00080
Z [auth A]1MG Parent Component: G

RESIDAA0071

Z [auth A]2MA Parent Component: A

RESIDAA0071

Z [auth A]2MG Parent Component: G

RESIDAA0071

Z [auth A]3TD Parent Component: U

RESIDAA0071

Z [auth A]5MC Parent Component: C

RESIDAA0071

Z [auth A]5MU Parent Component: U

RESIDAA0071

Z [auth A]6MZ Parent Component: A

RESIDAA0071

Z [auth A]G7M Parent Component: G

RESIDAA0071

Z [auth A]H2U Parent Component: U

RESIDAA0071

Z [auth A]OMC Parent Component: C

RESIDAA0071

Z [auth A]OMG Parent Component: G

RESIDAA0071

Z [auth A]OMU Parent Component: U

RESIDAA0071

Z [auth A]PSU Parent Component: U

RESIDAA0071

W [auth x]4SU Parent Component: U

RESIDAA0071

W [auth x]5MC Parent Component: C

RESIDAA0071

W [auth x]5MU Parent Component: U

RESIDAA0071

W [auth x]PSU Parent Component: U

RESIDAA0071

V [auth w],
X [auth y]
4SU Parent Component: U

RESIDAA0071

V [auth w],
X [auth y]
5MU Parent Component: U

RESIDAA0071

V [auth w],
X [auth y]
7MG Parent Component: G

RESIDAA0071

V [auth w],
X [auth y]
MIA Parent Component: A

RESIDAA0071

V [auth w],
X [auth y]
PSU Parent Component: U

RESIDAA0071

L [auth l]D2T Parent Component: ASP

RESIDAA0071

K [auth k]IAS RESIDAA0071

A [auth a]2MG Parent Component: G

RESIDAA0071

A [auth a]4OC Parent Component: C

RESIDAA0071

A [auth a]5MC Parent Component: C

RESIDAA0071

A [auth a]G7M Parent Component: G

RESIDAA0071

A [auth a]MA6 Parent Component: A

RESIDAA0071

A [auth a]PSU Parent Component: U

RESIDAA0071

A [auth a]UR3 Parent Component: U

RESIDAA0071