Annotations: 8TQ2

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth A]	SCOP2B Superfamily	Protein kinase-like (PK-like)	8079143	3000066	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth A]	PF00069	Protein kinase domain (Pkinase)	Protein kinase domain		Domain
D [auth B]	PF00134	Cyclin, N-terminal domain (Cyclin_N)	Cyclin, N-terminal domain	Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins [4]. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain.	Domain
D [auth B]	PF16899	Cyclin C-terminal domain (Cyclin_C_2)	Cyclin C-terminal domain	Cyclins contain two domains of similar all-alpha fold, this family corresponds with the C-terminal domain of some cyclins including cyclin C and cyclin H [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C]	Mediator of RNA polymerase II transcription subunit 12	transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding protein binding binding DNA-binding transcription factor binding nuclear vitamin D receptor binding transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity nuclear thyroid hormone receptor binding DNA binding sequence-specific DNA binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding protein binding binding DNA-binding transcription factor binding nuclear vitamin D receptor binding transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity nuclear thyroid hormone receptor binding DNA binding sequence-specific DNA binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding chromatin binding transcription coactivator activity aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity beta-catenin binding	developmental process multicellular organism development multicellular organismal process spinal cord development central nervous system development anatomical structure development nervous system development system development heart development animal organ development circulatory system development somitogenesis axis elongation epithelium development developmental process multicellular organism development multicellular organismal process spinal cord development central nervous system development anatomical structure development nervous system development system development heart development animal organ development circulatory system development somitogenesis axis elongation epithelium development developmental growth chordate embryonic development growth segmentation anterior/posterior pattern specification pattern specification process embryo development tissue development developmental growth involved in morphogenesis regionalization anatomical structure morphogenesis embryo development ending in birth or egg hatching somite development anatomical structure formation involved in morphogenesis axis elongation involved in somitogenesis cellular developmental process peripheral nervous system development cell development glial cell development neurogenesis Schwann cell development gliogenesis glial cell differentiation cell differentiation cellular process Schwann cell differentiation endoderm development primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal post-anal tail morphogenesis embryonic brain development embryonic organ development embryonic epithelial tube formation tube formation epithelial tube formation tube morphogenesis primary neural tube formation epithelial tube morphogenesis morphogenesis of embryonic epithelium neural tube development tube development embryonic morphogenesis morphogenesis of an epithelium tissue morphogenesis neural tube closure neural tube formation tube closure cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation Wnt signaling pathway, planar cell polarity pathway cell communication non-canonical Wnt signaling pathway signal transduction Wnt signaling pathway positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription positive regulation of metabolic process regulation of DNA-templated transcription initiation regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process transcription initiation at RNA polymerase II promoter positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription initiation by RNA polymerase II regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression positive regulation of transcription by RNA polymerase II macromolecule biosynthetic process nucleic acid metabolic process DNA-templated transcription initiation positive regulation of DNA-templated transcription initiation positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process regulation of transcription initiation by RNA polymerase II regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process oligodendrocyte development oligodendrocyte differentiation embryonic organ morphogenesis embryonic cranial skeleton morphogenesis embryonic neurocranium morphogenesis skeletal system development cranial skeletal system development animal organ morphogenesis embryonic skeletal system development skeletal system morphogenesis embryonic skeletal system morphogenesis somatic stem cell population maintenance maintenance of cell number stem cell population maintenance	membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex nucleus cyclin-dependent protein kinase holoenzyme complex nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex protein kinase complex transferase complex, transferring phosphorus-containing groups intracellular organelle cellular anatomical structure organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex nucleus cyclin-dependent protein kinase holoenzyme complex nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex protein kinase complex transferase complex, transferring phosphorus-containing groups intracellular organelle cellular anatomical structure organelle CKM complex serine/threonine protein kinase complex nuclear cyclin-dependent protein kinase holoenzyme complex membrane mediator complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen ubiquitin ligase complex intracellular protein-containing complex
B [auth D]	Mediator of RNA polymerase II transcription subunit 13	transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding protein binding binding DNA-binding transcription factor binding nuclear vitamin D receptor binding transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity nuclear thyroid hormone receptor binding transcription coactivator activity	regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription positive regulation of metabolic process regulation of DNA-templated transcription initiation regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription positive regulation of metabolic process regulation of DNA-templated transcription initiation regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process transcription initiation at RNA polymerase II promoter positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II regulation of biological process positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription initiation by RNA polymerase II biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression positive regulation of transcription by RNA polymerase II macromolecule biosynthetic process nucleic acid metabolic process DNA-templated transcription initiation positive regulation of DNA-templated transcription initiation positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process regulation of transcription initiation by RNA polymerase II cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process chemical homeostasis homeostatic process triglyceride homeostasis acylglycerol homeostasis lipid homeostasis sterol homeostasis cholesterol homeostasis	membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex nucleus cyclin-dependent protein kinase holoenzyme complex nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex protein kinase complex transferase complex, transferring phosphorus-containing groups intracellular organelle cellular anatomical structure organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex nucleus cyclin-dependent protein kinase holoenzyme complex nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex protein kinase complex transferase complex, transferring phosphorus-containing groups intracellular organelle cellular anatomical structure organelle CKM complex serine/threonine protein kinase complex nuclear cyclin-dependent protein kinase holoenzyme complex membrane mediator complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
C [auth A]	Cyclin-dependent kinase 8	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein serine/threonine kinase activity cyclin-dependent protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity cyclin-dependent protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups RNA polymerase II CTD heptapeptide repeat modifying activity RNA polymerase II CTD heptapeptide repeat kinase activity protein serine kinase activity	regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II regulation of biological process positive regulation of nucleobase-containing compound metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex nucleus cyclin-dependent protein kinase holoenzyme complex nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex protein kinase complex transferase complex, transferring phosphorus-containing groups intracellular organelle cellular anatomical structure organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex nucleus cyclin-dependent protein kinase holoenzyme complex nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex protein kinase complex transferase complex, transferring phosphorus-containing groups intracellular organelle cellular anatomical structure organelle CKM complex serine/threonine protein kinase complex nuclear cyclin-dependent protein kinase holoenzyme complex membrane-enclosed lumen intracellular membraneless organelle nucleolus intracellular organelle lumen organelle lumen membraneless organelle nuclear lumen mediator complex nucleoplasm
D [auth B]	Cyclin-C	enzyme regulator activity cyclin-dependent protein serine/threonine kinase regulator activity cyclin-dependent protein kinase regulator activity molecular function regulator activity protein kinase regulator activity kinase regulator activity identical protein binding protein binding binding	regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II regulation of biological process positive regulation of nucleobase-containing compound metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process G0 to G1 transition cell cycle cell cycle process cellular response to stimulus response to stimulus negative regulation of signaling signaling negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication negative regulation of cellular process signal transduction regulation of signaling cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of signal transduction Notch signaling pathway negative regulation of Notch signaling pathway regulation of response to stimulus regulation of Notch signaling pathway regulation of cell communication	membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex nucleus cyclin-dependent protein kinase holoenzyme complex nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex protein kinase complex transferase complex, transferring phosphorus-containing groups intracellular organelle cellular anatomical structure organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex nucleus cyclin-dependent protein kinase holoenzyme complex nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex protein kinase complex transferase complex, transferring phosphorus-containing groups intracellular organelle cellular anatomical structure organelle CKM complex serine/threonine protein kinase complex nuclear cyclin-dependent protein kinase holoenzyme complex mediator complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C]	IPR021990	Mediator complex, subunit Med12, LCEWAV-domain	Domain
A [auth C]	IPR019035	Mediator complex, subunit Med12	Domain
A [auth C]	IPR051647	Mediator complex subunit 12	Family
A [auth C]	IPR021989	Mediator complex, subunit Med12, catenin-binding	Domain
B [auth D]	IPR041285	MID domain of medPIWI	Domain
B [auth D]	IPR051139	Mediator complex subunit 13	Family
B [auth D]	IPR009401	Mediator complex subunit Med13, C-terminal	Domain
C [auth A]	IPR017441	Protein kinase, ATP binding site	Binding Site
C [auth A]	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
C [auth A]	IPR000719	Protein kinase domain	Domain
C [auth A]	IPR050108	Cyclin-dependent kinase	Family
C [auth A]	IPR008271	Serine/threonine-protein kinase, active site	Active Site
D [auth B]	IPR031658	Cyclin, C-terminal domain 2	Domain
D [auth B]	IPR006671	Cyclin, N-terminal	Domain
D [auth B]	IPR036915	Cyclin-like superfamily	Homologous Superfamily
D [auth B]	IPR043198	Cyclin/Cyclin-like subunit Ssn8	Family
D [auth B]	IPR013763	Cyclin-like domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth C]	Pharos: Q93074	FG syndrome blepharophimosis - intellectual disability syndrome, MKB type prostate cancer adrenal cortex carcinoma breast fibroadenoma intellectual disability breast carcinoma FG syndrome 1 X-linked intellectual disability with marfanoid habitus Ohdo syndrome and variants benign breast phyllodes tumor Lujan Fryns syndrome adrenal carcinoma astrocytic tumor oligodendroglioma FG syndrome blepharophimosis - intellectual disability syndrome, MKB type prostate cancer adrenal cortex carcinoma breast fibroadenoma intellectual disability breast carcinoma FG syndrome 1 X-linked intellectual disability with marfanoid habitus Ohdo syndrome and variants benign breast phyllodes tumor Lujan Fryns syndrome adrenal carcinoma astrocytic tumor oligodendroglioma psoriasis depressive disorder syndromic X-linked intellectual disability 14 uterine corpus leiomyoma FG syndrome 3 large cell medulloblastoma major depressive disorder medulloblastoma atypical teratoid rhabdoid tumor osteosarcoma blepharophimosis - intellectual disability syndrome, Ohdo type prostate carcinoma Ehlers-Danlos syndrome thoracic aortic aneurysm leiomyoma malignant breast phyllodes tumor arthrogryposis phyllodes tumor breast cancer schizophrenia FG syndrome 2
B [auth D]	Pharos: Q9UHV7	atypical teratoid rhabdoid tumor lung cancer osteosarcoma rheumatoid arthritis ulcerative colitis glioblastoma lymphoplasmacytic lymphoma ovarian cancer spina bifida large cell medulloblastoma medulloblastoma Pick disease tuberculosis
C [auth A]	Pharos: P49336	adrenal cortex carcinoma colorectal adenocarcinoma lung cancer ovarian cancer pituitary cancer subependymal giant cell astrocytoma breast cancer intellectual disability medulloblastoma pancreatic intraductal papillary-mucinous neoplasm pituitary gland adenoma chronic myelogenous leukemia, BCR-ABL1 positive large cell medulloblastoma osteosarcoma Philadelphia chromosome-positive acute lymphoblastic leukemia adrenal cortex carcinoma colorectal adenocarcinoma lung cancer ovarian cancer pituitary cancer subependymal giant cell astrocytoma breast cancer intellectual disability medulloblastoma pancreatic intraductal papillary-mucinous neoplasm pituitary gland adenoma chronic myelogenous leukemia, BCR-ABL1 positive large cell medulloblastoma osteosarcoma Philadelphia chromosome-positive acute lymphoblastic leukemia psoriasis
D [auth B]	Pharos: P24863	IgA glomerulonephritis ovarian cancer juvenile dermatomyositis pancreatic ductal adenocarcinoma myopathy spina bifida

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.