8TVR | pdb_00008tvr

In situ cryo-EM structure of bacteriophage P22 tail hub protein: tailspike protein complex at 2.8A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
W [auth X]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
V [auth W]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
U [auth V]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
S [auth R]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
R [auth Q]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
Q [auth P]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
O [auth N]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
N [auth M]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
M [auth L]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
K [auth J]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
J [auth I]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
I [auth H]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
G [auth F]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D [auth S], H [auth G], L [auth K], P [auth O], T, D [auth S], H [auth G], L [auth K], P [auth O], T, X [auth Y]	PF11134	Phage stabilisation protein (Phage_stabilise)	Phage stabilisation protein	-	Family
A, B, C, E [auth D], F [auth E], A, B, C, E [auth D], F [auth E], G [auth F], I [auth H], J [auth I], K [auth J], M [auth L], N [auth M], O [auth N], Q [auth P], R [auth Q], S [auth R], U [auth V], V [auth W], W [auth X]	PF09251	Salmonella phage P22 tail-spike (PhageP22-tail)	Salmonella phage P22 tail-spike	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth S], H [auth G], L [auth K], P [auth O], T, D [auth S], H [auth G], L [auth K], P [auth O], T, X [auth Y]	Packaged DNA stabilization protein gp10	-	-	-
A, B, C, E [auth D], F [auth E], A, B, C, E [auth D], F [auth E], G [auth F], I [auth H], J [auth I], K [auth J], M [auth L], N [auth M], O [auth N], Q [auth P], R [auth Q], S [auth R], U [auth V], V [auth W], W [auth X]	Tail spike protein	hydrolase activity, acting on glycosyl bonds endo-1,3-alpha-L-rhamnosidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity	biological process involved in interspecies interaction between organisms symbiont entry into host biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host adhesion receptor-mediated virion attachment to host cell symbiont-mediated disruption of host anatomical structure symbiont-mediated disruption of host cell envelope symbiont-mediated disruption of host cellular anatomical structure biological process involved in interspecies interaction between organisms symbiont entry into host biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host adhesion receptor-mediated virion attachment to host cell symbiont-mediated disruption of host anatomical structure symbiont-mediated disruption of host cell envelope symbiont-mediated disruption of host cellular anatomical structure symbiont entry into host cell via disruption of host cell envelope symbiont entry into host cell disruption of anatomical structure in another organism symbiont entry into host cell via disruption of host cell envelope lipopolysaccharide symbiont-mediated disruption of host cell wall	virus tail, fiber virus tail virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth S], H [auth G], L [auth K], P [auth O], T, D [auth S], H [auth G], L [auth K], P [auth O], T, X [auth Y]	IPR021098	Bacteriophage P22, Gp10, DNA-stabilising	Family
A, B, C, E [auth D], F [auth E], A, B, C, E [auth D], F [auth E], G [auth F], I [auth H], J [auth I], K [auth J], M [auth L], N [auth M], O [auth N], Q [auth P], R [auth Q], S [auth R], U [auth V], V [auth W], W [auth X]	IPR012332	Autotransporter, pectate lyase C-like domain superfamily	Homologous Superfamily
A, B, C, E [auth D], F [auth E], A, B, C, E [auth D], F [auth E], G [auth F], I [auth H], J [auth I], K [auth J], M [auth L], N [auth M], O [auth N], Q [auth P], R [auth Q], S [auth R], U [auth V], V [auth W], W [auth X]	IPR015331	P22 tailspike C-terminal domain	Domain
A, B, C, E [auth D], F [auth E], A, B, C, E [auth D], F [auth E], G [auth F], I [auth H], J [auth I], K [auth J], M [auth L], N [auth M], O [auth N], Q [auth P], R [auth Q], S [auth R], U [auth V], V [auth W], W [auth X]	IPR036730	Phage P22 tailspike-like, N-terminal domain superfamily	Homologous Superfamily
A, B, C, E [auth D], F [auth E], A, B, C, E [auth D], F [auth E], G [auth F], I [auth H], J [auth I], K [auth J], M [auth L], N [auth M], O [auth N], Q [auth P], R [auth Q], S [auth R], U [auth V], V [auth W], W [auth X]	IPR009093	Bacteriophage P22 tailspike, N-terminal	Domain
A, B, C, E [auth D], F [auth E], A, B, C, E [auth D], F [auth E], G [auth F], I [auth H], J [auth I], K [auth J], M [auth L], N [auth M], O [auth N], Q [auth P], R [auth Q], S [auth R], U [auth V], V [auth W], W [auth X]	IPR011050	Pectin lyase fold/virulence factor	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.