8U11 | pdb_00008u11

In situ cryo-EM structure of bacteriophage P22 gp1:gp5:gp4: gp10: gp9 N-term complex in conformation 2 at 3.1A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
ZA [auth G]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
YA [auth A]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
XA [auth C]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
WA [auth E]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
FB [auth J]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
EB [auth H]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
DB [auth F]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
CB [auth B]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
BB [auth D]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
AB [auth I]	SCOP2B Superfamily	Phage coat protein-like	8054154	3001529	SCOP2B (2022-06-29)
Z [auth y]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
VA [auth x]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
TA [auth v]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
RA [auth u]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
PA [auth t]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
NA [auth s]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
LA [auth r]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
JA [auth q]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
HA [auth p]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
FA [auth o]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
DA [auth n]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
BA [auth m]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104062	3001980	SCOP2B (2022-06-29)
X [auth 24]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
W [auth 23]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
V [auth 22]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
U [auth 21]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
T [auth 20]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
S [auth 19]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
R [auth 18]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
Q [auth 17]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
P [auth 16]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
O [auth 15]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
N [auth 14]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
M [auth 13]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
L [auth 12]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
K [auth 11]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
J [auth 10]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
I [auth 9]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
H [auth 8]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)
G [auth 7]	SCOP2B Superfamily	Head-binding domain of phage P22 tailspike protein	8043159	3002008	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AB [auth I], BB [auth D], CB [auth B], DB [auth F], EB [auth H], AB [auth I], BB [auth D], CB [auth B], DB [auth F], EB [auth H], FB [auth J], WA [auth E], XA [auth C], YA [auth A], ZA [auth G]	PF16510	Phage P22-like portal protein (P22_portal)	Phage P22-like portal protein	-	Family
G [auth 7], H [auth 8], I [auth 9], J [auth 10], K [auth 11], G [auth 7], H [auth 8], I [auth 9], J [auth 10], K [auth 11], L [auth 12], M [auth 13], N [auth 14], O [auth 15], P [auth 16], Q [auth 17], R [auth 18], S [auth 19], T [auth 20], U [auth 21], V [auth 22], W [auth 23], X [auth 24]	PF09251	Salmonella phage P22 tail-spike (PhageP22-tail)	Salmonella phage P22 tail-spike	-	Repeat
A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6]	PF11134	Phage stabilisation protein (Phage_stabilise)	Phage stabilisation protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AB [auth I], BB [auth D], CB [auth B], DB [auth F], EB [auth H], AB [auth I], BB [auth D], CB [auth B], DB [auth F], EB [auth H], FB [auth J], WA [auth E], XA [auth C], YA [auth A], ZA [auth G]	Major capsid protein	identical protein binding protein binding binding	virus maturation viral life cycle viral capsid assembly viral procapsid maturation cellular component biogenesis cellular component organization virion assembly cellular component assembly viral process cellular process cellular component organization or biogenesis	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component viral procapsid
BA [auth m], DA [auth n], FA [auth o], HA [auth p], JA [auth q], BA [auth m], DA [auth n], FA [auth o], HA [auth p], JA [auth q], LA [auth r], NA [auth s], PA [auth t], RA [auth u], TA [auth v], VA [auth x], Z [auth y]	Peptidoglycan hydrolase gp4	hydrolase activity catalytic activity	symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms viral life cycle symbiont-mediated disruption of host cell wall symbiont-mediated disruption of host cell envelope symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell via disruption of host cell wall peptidoglycan symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism symbiont genome ejection through host cell envelope symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms viral life cycle symbiont-mediated disruption of host cell wall symbiont-mediated disruption of host cell envelope symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell via disruption of host cell wall peptidoglycan symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism symbiont genome ejection through host cell envelope symbiont genome ejection through host cell envelope, short tail mechanism symbiont entry into host cell via disruption of host cell envelope	virus tail virion component
AA [auth b], CA [auth c], EA [auth d], GA [auth e], IA [auth l], AA [auth b], CA [auth c], EA [auth d], GA [auth e], IA [auth l], KA [auth f], MA [auth k], OA [auth i], QA [auth j], SA [auth h], UA [auth g], Y [auth a]	Portal protein	-	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism biological process involved in interaction with host biological process involved in symbiotic interaction viral DNA genome packaging, headful	protein-containing complex viral capsid virion component viral portal complex
G [auth 7], H [auth 8], I [auth 9], J [auth 10], K [auth 11], G [auth 7], H [auth 8], I [auth 9], J [auth 10], K [auth 11], L [auth 12], M [auth 13], N [auth 14], O [auth 15], P [auth 16], Q [auth 17], R [auth 18], S [auth 19], T [auth 20], U [auth 21], V [auth 22], W [auth 23], X [auth 24]	Tail spike protein	hydrolase activity, acting on glycosyl bonds endo-1,3-alpha-L-rhamnosidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity	biological process involved in interspecies interaction between organisms symbiont entry into host biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host adhesion receptor-mediated virion attachment to host cell symbiont-mediated disruption of host anatomical structure symbiont-mediated disruption of host cell envelope symbiont-mediated disruption of host cellular anatomical structure biological process involved in interspecies interaction between organisms symbiont entry into host biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host adhesion receptor-mediated virion attachment to host cell symbiont-mediated disruption of host anatomical structure symbiont-mediated disruption of host cell envelope symbiont-mediated disruption of host cellular anatomical structure symbiont entry into host cell via disruption of host cell envelope symbiont entry into host cell disruption of anatomical structure in another organism symbiont entry into host cell via disruption of host cell envelope lipopolysaccharide symbiont-mediated disruption of host cell wall	virus tail, fiber virus tail virion component
A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6]	Packaged DNA stabilization protein gp10	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AB [auth I], BB [auth D], CB [auth B], DB [auth F], EB [auth H], AB [auth I], BB [auth D], CB [auth B], DB [auth F], EB [auth H], FB [auth J], WA [auth E], XA [auth C], YA [auth A], ZA [auth G]	IPR024659	Major capsid protein Gp5	Family
BA [auth m], DA [auth n], FA [auth o], HA [auth p], JA [auth q], BA [auth m], DA [auth n], FA [auth o], HA [auth p], JA [auth q], LA [auth r], NA [auth s], PA [auth t], RA [auth u], TA [auth v], VA [auth x], Z [auth y]	IPR038258	Peptidoglycan hydrolase Gp4 superfamily	Homologous Superfamily
BA [auth m], DA [auth n], FA [auth o], HA [auth p], JA [auth q], BA [auth m], DA [auth n], FA [auth o], HA [auth p], JA [auth q], LA [auth r], NA [auth s], PA [auth t], RA [auth u], TA [auth v], VA [auth x], Z [auth y]	IPR020362	Tail accessory factor GP4	Family
AA [auth b], CA [auth c], EA [auth d], GA [auth e], IA [auth l], AA [auth b], CA [auth c], EA [auth d], GA [auth e], IA [auth l], KA [auth f], MA [auth k], OA [auth i], QA [auth j], SA [auth h], UA [auth g], Y [auth a]	IPR032427	Phage P22-like portal protein	Family
G [auth 7], H [auth 8], I [auth 9], J [auth 10], K [auth 11], G [auth 7], H [auth 8], I [auth 9], J [auth 10], K [auth 11], L [auth 12], M [auth 13], N [auth 14], O [auth 15], P [auth 16], Q [auth 17], R [auth 18], S [auth 19], T [auth 20], U [auth 21], V [auth 22], W [auth 23], X [auth 24]	IPR012332	Autotransporter, pectate lyase C-like domain superfamily	Homologous Superfamily
G [auth 7], H [auth 8], I [auth 9], J [auth 10], K [auth 11], G [auth 7], H [auth 8], I [auth 9], J [auth 10], K [auth 11], L [auth 12], M [auth 13], N [auth 14], O [auth 15], P [auth 16], Q [auth 17], R [auth 18], S [auth 19], T [auth 20], U [auth 21], V [auth 22], W [auth 23], X [auth 24]	IPR015331	P22 tailspike C-terminal domain	Domain
G [auth 7], H [auth 8], I [auth 9], J [auth 10], K [auth 11], G [auth 7], H [auth 8], I [auth 9], J [auth 10], K [auth 11], L [auth 12], M [auth 13], N [auth 14], O [auth 15], P [auth 16], Q [auth 17], R [auth 18], S [auth 19], T [auth 20], U [auth 21], V [auth 22], W [auth 23], X [auth 24]	IPR036730	Phage P22 tailspike-like, N-terminal domain superfamily	Homologous Superfamily
G [auth 7], H [auth 8], I [auth 9], J [auth 10], K [auth 11], G [auth 7], H [auth 8], I [auth 9], J [auth 10], K [auth 11], L [auth 12], M [auth 13], N [auth 14], O [auth 15], P [auth 16], Q [auth 17], R [auth 18], S [auth 19], T [auth 20], U [auth 21], V [auth 22], W [auth 23], X [auth 24]	IPR009093	Bacteriophage P22 tailspike, N-terminal	Domain
G [auth 7], H [auth 8], I [auth 9], J [auth 10], K [auth 11], G [auth 7], H [auth 8], I [auth 9], J [auth 10], K [auth 11], L [auth 12], M [auth 13], N [auth 14], O [auth 15], P [auth 16], Q [auth 17], R [auth 18], S [auth 19], T [auth 20], U [auth 21], V [auth 22], W [auth 23], X [auth 24]	IPR011050	Pectin lyase fold/virulence factor	Homologous Superfamily
A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6]	IPR021098	Bacteriophage P22, Gp10, DNA-stabilising	Family