8X2Z | pdb_00008x2z

The class2 of piccolo NuA4 bound to the H2A.Z nucleosome complex at harboring state


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyCore histone-like 8067142 3001387 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCore histone-like 8067142 3001387 SCOP2B (2022-06-29)
K [auth M]SCOP2B SuperfamilyEPL1 ESA1-binding domain-like 8055777 3002308 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCore histone-like 8036585 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like 8036585 3001387 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCore histone-like 8036586 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like 8036586 3001387 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCore histone-like 8103853 3001387 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyCore histone-like 8103853 3001387 SCOP2B (2022-06-29)
I [auth K]SCOP2B Superfamilybeta-beta-alpha zinc fingers 8101147 3001077 SCOP2B (2022-06-29)
I [auth K]SCOP2B SuperfamilyAcyl-CoA N-acyltransferases (Nat) 8036035 3000403 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C, G
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
B, F
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
I [auth K]PF17772MYST family zinc finger domain (zf-MYST)MYST family zinc finger domainThis zinc finger domain is found in the MYST family of histone acetyltransferases [1]. Domain
I [auth K]PF01853MOZ/SAS family (MOZ_SAS)MOZ/SAS family- Family
L [auth N]PF12998Inhibitor of growth proteins N-terminal histone-binding (ING)Inhibitor of growth proteins N-terminal histone-binding- Coiled-coil

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C, G
Histone H2A
K [auth M]glutathione transferase,Enhancer of polycomb-like protein
M [auth I],
N [auth J]
DNA (146-MER)---
A, E
Histone H3
B, F
Histone H4
D, H
Histone H2B
I [auth K]Histone acetyltransferase
J [auth L]Maltose/maltodextrin-binding periplasmic protein,Chromatin modification-related protein EAF6-
L [auth N]Chromatin modification-related protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C, G
IPR009072Histone-foldHomologous Superfamily
C, G
IPR007125Histone H2A/H2B/H3Domain
C, G
IPR002119Histone H2AFamily
C, G
IPR032454Histone H2A, C-terminal domainDomain
C, G
IPR032458Histone H2A conserved siteConserved Site
K [auth M]IPR024943Enhancer of polycomb proteinFamily
K [auth M]IPR019542Enhancer of polycomb-like, N-terminalDomain
K [auth M]IPR004046Glutathione S-transferase, C-terminalDomain
K [auth M]IPR050213Glutathione S-transferase superfamilyFamily
K [auth M]IPR010987Glutathione S-transferase, C-terminal-likeDomain
K [auth M]IPR036282Glutathione S-transferase, C-terminal domain superfamilyHomologous Superfamily
K [auth M]IPR004045Glutathione S-transferase, N-terminalDomain
K [auth M]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
K [auth M]IPR040079Glutathione transferase familyFamily
A, E
IPR009072Histone-foldHomologous Superfamily
A, E
IPR007125Histone H2A/H2B/H3Domain
A, E
IPR000164Histone H3/CENP-AFamily
B, F
IPR009072Histone-foldHomologous Superfamily
B, F
IPR035425CENP-T/Histone H4, histone foldDomain
B, F
IPR001951Histone H4Family
B, F
IPR019809Histone H4, conserved siteConserved Site
D, H
IPR009072Histone-foldHomologous Superfamily
D, H
IPR007125Histone H2A/H2B/H3Domain
D, H
IPR000558Histone H2BFamily
D, H
IPR055333Histone H2B, conserved siteConserved Site
I [auth K]IPR002717Histone acetyltransferase domain, MYST-typeDomain
I [auth K]IPR016197Chromo-like domain superfamilyHomologous Superfamily
I [auth K]IPR050603MYST family histone acetyltransferasesFamily
I [auth K]IPR000953Chromo/chromo shadow domainDomain
I [auth K]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
I [auth K]IPR025995RNA binding activity-knot of a chromodomainDomain
I [auth K]IPR016181Acyl-CoA N-acyltransferaseHomologous Superfamily
I [auth K]IPR040706MYST, zinc finger domainDomain
J [auth L]IPR015418Chromatin modification-related protein Eaf6Family
L [auth N]IPR001965Zinc finger, PHD-typeDomain
L [auth N]IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
L [auth N]IPR028651ING familyFamily
L [auth N]IPR019787Zinc finger, PHD-fingerDomain
L [auth N]IPR024610Inhibitor of growth protein, N-terminal histone-bindingDomain
L [auth N]IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
L [auth N]IPR019786Zinc finger, PHD-type, conserved siteConserved Site