9A9Q | pdb_00009a9q

Complex of the Rad50-nucleotide free (apo) closed conformation of P. furiosus Mre11-Rad50 bound to dsDNA

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I, J	DNA (36-MER)	-	-	-
G, H	DNA double-strand break repair protein Mre11	hydrolase activity, acting on ester bonds nuclease activity catalytic activity, acting on a nucleic acid 3'-5' exonuclease activity hydrolase activity exonuclease activity catalytic activity DNA binding binding DNA end binding nucleic acid binding DNA endonuclease activity endonuclease activity catalytic activity, acting on DNA hydrolase activity, acting on ester bonds nuclease activity catalytic activity, acting on a nucleic acid 3'-5' exonuclease activity hydrolase activity exonuclease activity catalytic activity DNA binding binding DNA end binding nucleic acid binding DNA endonuclease activity endonuclease activity catalytic activity, acting on DNA DNA nuclease activity DNA secondary structure binding Y-form DNA binding cation binding manganese ion binding transition metal ion binding ion binding metal ion binding small molecule binding identical protein binding protein binding	cellular response to stimulus double-strand break repair response to stimulus DNA double-strand break processing primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process cellular response to stimulus double-strand break repair response to stimulus DNA double-strand break processing primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair	-
C, F	DNA double-strand break repair protein Mre11	hydrolase activity, acting on ester bonds nuclease activity catalytic activity, acting on a nucleic acid 3'-5' exonuclease activity hydrolase activity exonuclease activity catalytic activity DNA binding binding DNA end binding nucleic acid binding DNA endonuclease activity endonuclease activity catalytic activity, acting on DNA hydrolase activity, acting on ester bonds nuclease activity catalytic activity, acting on a nucleic acid 3'-5' exonuclease activity hydrolase activity exonuclease activity catalytic activity DNA binding binding DNA end binding nucleic acid binding DNA endonuclease activity endonuclease activity catalytic activity, acting on DNA DNA nuclease activity DNA secondary structure binding Y-form DNA binding cation binding manganese ion binding transition metal ion binding ion binding metal ion binding small molecule binding identical protein binding protein binding	cellular response to stimulus double-strand break repair response to stimulus DNA double-strand break processing primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process cellular response to stimulus double-strand break repair response to stimulus DNA double-strand break processing primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair	-
B, E	DNA double-strand break repair Rad50 ATPase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity cation binding transition metal ion binding zinc ion binding metal ion binding identical protein binding protein binding	cellular response to stimulus double-strand break repair response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair	-
A, D	DNA double-strand break repair Rad50 ATPase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity cation binding transition metal ion binding zinc ion binding metal ion binding identical protein binding protein binding	cellular response to stimulus double-strand break repair response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G, H	IPR054745	DNA double-strand break repair protein Mre11, thermococcales	Family
G, H	IPR054741	DNA double-strand break repair protein Mre11, second domain	Domain
G, H	IPR004843	Calcineurin-like, phosphoesterase domain	Domain
G, H	IPR029052	Metallo-dependent phosphatase-like	Homologous Superfamily
G, H	IPR032885	DNA double-strand break repair protein Mre11, archaea-type	Family
G, H	IPR050535	DNA Repair and Maintenance Complex Component	Family
G, H	IPR041796	DNA double-strand break repair protein Mre11, N-terminal metallophosphatase domain	Domain
C, F	IPR054745	DNA double-strand break repair protein Mre11, thermococcales	Family
C, F	IPR054741	DNA double-strand break repair protein Mre11, second domain	Domain
C, F	IPR004843	Calcineurin-like, phosphoesterase domain	Domain
C, F	IPR029052	Metallo-dependent phosphatase-like	Homologous Superfamily
C, F	IPR032885	DNA double-strand break repair protein Mre11, archaea-type	Family
C, F	IPR050535	DNA Repair and Maintenance Complex Component	Family
C, F	IPR041796	DNA double-strand break repair protein Mre11, N-terminal metallophosphatase domain	Domain
B, E	IPR022982	DNA double-strand break repair Rad50 ATPase, archaeal type	Family
B, E	IPR013134	RAD50, zinc hook	Domain
B, E	IPR038729	Rad50/SbcC-type AAA domain	Domain
B, E	IPR003959	ATPase, AAA-type, core	Domain
B, E	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, D	IPR022982	DNA double-strand break repair Rad50 ATPase, archaeal type	Family
A, D	IPR013134	RAD50, zinc hook	Domain
A, D	IPR038729	Rad50/SbcC-type AAA domain	Domain
A, D	IPR003959	ATPase, AAA-type, core	Domain
A, D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 9A9Q | pdb_00009a9q

Complex of the Rad50-nucleotide free (apo) closed conformation of P. furiosus Mre11-Rad50 bound to dsDNA

External Resource: Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

9A9Q | pdb_00009a9q