9B51 | pdb_00009b51

E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth AB]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
C [auth AC]PF07650KH domain (KH_2)KH domainDomain
C [auth AC]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
D [auth AD]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
D [auth AD]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
E [auth AE]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
E [auth AE]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
F [auth AF]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
I [auth AI]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
L [auth AL]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
M [auth AM]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
N [auth AN]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
Q [auth AQ]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
CA [auth B3]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
DA [auth B4]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
EA [auth B5]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
HA [auth BC]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
HA [auth BC]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
IA [auth BD]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
JA [auth BE]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
LA [auth BG]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
MA [auth BH]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
OA [auth BK]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
PA [auth BL]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
RA [auth BN]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
VA [auth BR]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
WA [auth BS]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
BB [auth BX]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
DB [auth BZ]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
K [auth AK]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
O [auth AO]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
P [auth AP]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
AA [auth B1]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
BA [auth B2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
QA [auth BM]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
UA [auth BQ]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth AA]16S ribosomal RNA---
B [auth AB]30S ribosomal protein S2
C [auth AC]30S ribosomal protein S3
D [auth AD]30S ribosomal protein S4
E [auth AE]30S ribosomal protein S5
F [auth AF]30S ribosomal protein S6
G [auth AG]30S ribosomal protein S7
H [auth AH]30S ribosomal protein S8---
I [auth AI]30S ribosomal protein S9
J [auth AJ]30S ribosomal protein S10---
L [auth AL]30S ribosomal protein S12
M [auth AM]30S ribosomal protein S13
N [auth AN]30S ribosomal protein S14
Q [auth AQ]30S ribosomal protein S17
R [auth AR]30S ribosomal protein S18
S [auth AS]30S ribosomal protein S19---
T [auth AT]30S ribosomal protein S20
U [auth AU]30S ribosomal protein S21
V [auth AV]mRNA---
W [auth AW],
Y [auth AY]
tRNA-Val---
X [auth AX]tRNA-fMet---
Z [auth B0]50S ribosomal protein L32---
CA [auth B3]50S ribosomal protein L35
DA [auth B4]50S ribosomal protein L36
EA [auth B5]50S ribosomal protein L31
FA [auth BA]23S ribosomal RNA---
GA [auth BB]5S ribosomal RNA---
HA [auth BC]50S ribosomal protein L2
IA [auth BD]50S ribosomal protein L3
JA [auth BE]50S ribosomal protein L4
KA [auth BF]50S ribosomal protein L5---
LA [auth BG]50S ribosomal protein L6
MA [auth BH]50S ribosomal protein L9
NA [auth BJ]50S ribosomal protein L13---
OA [auth BK]50S ribosomal protein L14
PA [auth BL]50S ribosomal protein L15
RA [auth BN]50S ribosomal protein L17
SA [auth BO]50S ribosomal protein L18---
TA [auth BP]50S ribosomal protein L19---
VA [auth BR]50S ribosomal protein L21
WA [auth BS]50S ribosomal protein L22
XA [auth BT]50S ribosomal protein L23---
YA [auth BU]50S ribosomal protein L24---
BB [auth BX]50S ribosomal protein L28
CB [auth BY]50S ribosomal protein L29---
DB [auth BZ]50S ribosomal protein L30
K [auth AK]30S ribosomal protein S11
O [auth AO]30S ribosomal protein S15
P [auth AP]30S ribosomal protein S16
AA [auth B1]50S ribosomal protein L33
BA [auth B2]50S ribosomal protein L34
QA [auth BM]50S ribosomal protein L16
UA [auth BQ]50S ribosomal protein L20
ZA [auth BV]50S ribosomal protein L25---
AB [auth BW]50S ribosomal protein L27

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth AB]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth AB]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth AB]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth AB]IPR001865Small ribosomal subunit protein uS2Family
C [auth AC]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
C [auth AC]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
C [auth AC]IPR004087K Homology domainDomain
C [auth AC]IPR004044K Homology domain, type 2Domain
C [auth AC]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
C [auth AC]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
C [auth AC]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
C [auth AC]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
D [auth AD]IPR002942RNA-binding S4 domainDomain
D [auth AD]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
D [auth AD]IPR022801Small ribosomal subunit protein uS4Family
D [auth AD]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
D [auth AD]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
D [auth AD]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth AE]IPR000851Small ribosomal subunit protein uS5Family
E [auth AE]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth AE]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth AE]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth AE]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth AE]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
E [auth AE]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
F [auth AF]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
F [auth AF]IPR000529Small ribosomal subunit protein bS6Family
F [auth AF]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth AF]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth AF]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
G [auth AG]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth AG]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth AG]IPR000235Small ribosomal subunit protein uS7Family
G [auth AG]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
G [auth AG]IPR023798Small ribosomal subunit protein uS7 domainDomain
I [auth AI]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
I [auth AI]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
I [auth AI]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
I [auth AI]IPR000754Small ribosomal subunit protein uS9Family
I [auth AI]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
L [auth AL]IPR005679Ribosomal protein uS12, bacterial-typeFamily
L [auth AL]IPR006032Small ribosomal subunit protein uS12Family
L [auth AL]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth AM]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
M [auth AM]IPR001892Small ribosomal subunit protein uS13Family
M [auth AM]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
M [auth AM]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
M [auth AM]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
N [auth AN]IPR001209Small ribosomal subunit protein uS14Family
N [auth AN]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
N [auth AN]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
Q [auth AQ]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
Q [auth AQ]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
Q [auth AQ]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth AQ]IPR000266Small ribosomal subunit protein uS17Family
R [auth AR]IPR001648Small ribosomal subunit protein bS18Family
R [auth AR]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
R [auth AR]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
T [auth AT]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
T [auth AT]IPR002583Small ribosomal subunit protein bS20Family
U [auth AU]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
U [auth AU]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
U [auth AU]IPR001911Small ribosomal subunit protein bS21Family
CA [auth B3]IPR021137Large ribosomal subunit protein bL35-likeFamily
CA [auth B3]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
CA [auth B3]IPR001706Large ribosomal subunit protein bL35Family
CA [auth B3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
DA [auth B4]IPR000473Large ribosomal subunit protein bL36Family
DA [auth B4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
EA [auth B5]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
EA [auth B5]IPR027491Large ribosomal subunit protein bL31 type AFamily
EA [auth B5]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
EA [auth B5]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
HA [auth BC]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
HA [auth BC]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
HA [auth BC]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
HA [auth BC]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
HA [auth BC]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
HA [auth BC]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
HA [auth BC]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
HA [auth BC]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
HA [auth BC]IPR002171Large ribosomal subunit protein uL2Family
IA [auth BD]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IA [auth BD]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
IA [auth BD]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IA [auth BD]IPR000597Large ribosomal subunit protein uL3Family
JA [auth BE]IPR013005Large ribosomal subunit protein uL4-likeFamily
JA [auth BE]IPR002136Large ribosomal subunit protein uL4Family
JA [auth BE]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
LA [auth BG]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
LA [auth BG]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
LA [auth BG]IPR000702Large ribosomal subunit protein uL6-likeFamily
LA [auth BG]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
LA [auth BG]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
MA [auth BH]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
MA [auth BH]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
MA [auth BH]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
MA [auth BH]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
MA [auth BH]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
MA [auth BH]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
MA [auth BH]IPR000244Large ribosomal subunit protein bL9Family
OA [auth BK]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
OA [auth BK]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
OA [auth BK]IPR000218Large ribosomal subunit protein uL14Family
OA [auth BK]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
PA [auth BL]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
PA [auth BL]IPR021131Large ribosomal subunit protein uL15/eL18Domain
PA [auth BL]IPR030878Large ribosomal subunit protein uL15Family
PA [auth BL]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
PA [auth BL]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
RA [auth BN]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
RA [auth BN]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
RA [auth BN]IPR000456Large ribosomal subunit protein bL17Family
VA [auth BR]IPR028909Large ribosomal subunit protein bL21-likeFamily
VA [auth BR]IPR001787Large ribosomal subunit protein bL21Family
VA [auth BR]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
VA [auth BR]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
WA [auth BS]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
WA [auth BS]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
WA [auth BS]IPR001063Large ribosomal subunit protein uL22Family
WA [auth BS]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
WA [auth BS]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
BB [auth BX]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
BB [auth BX]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
BB [auth BX]IPR026569Large ribosomal subunit protein bL28Family
BB [auth BX]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
DB [auth BZ]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
DB [auth BZ]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
DB [auth BZ]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
DB [auth BZ]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
K [auth AK]IPR001971Small ribosomal subunit protein uS11Family
K [auth AK]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
K [auth AK]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
K [auth AK]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
O [auth AO]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
O [auth AO]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
O [auth AO]IPR000589Small ribosomal subunit protein uS15Family
P [auth AP]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
P [auth AP]IPR000307Small ribosomal subunit protein bS16Family
P [auth AP]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
AA [auth B1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AA [auth B1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
AA [auth B1]IPR001705Large ribosomal subunit protein bL33Family
AA [auth B1]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
BA [auth B2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
BA [auth B2]IPR000271Large ribosomal subunit protein bL34Family
QA [auth BM]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
QA [auth BM]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
QA [auth BM]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
QA [auth BM]IPR016180Large ribosomal subunit protein uL16 domainDomain
QA [auth BM]IPR047873Large ribosomal subunit protein uL16Family
UA [auth BQ]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
UA [auth BQ]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
UA [auth BQ]IPR005813Large ribosomal subunit protein bL20Family
AB [auth BW]IPR001684Large ribosomal subunit protein bL27Family
AB [auth BW]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site