9CYE | pdb_00009cye

Cryo-EM structure of DA03E17 Fab in complex with influenza virus neuraminidase from A/California/07/2009 (H1N1)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth D]	SCOP2B Superfamily	Sialidases	8071672	3001607	SCOP2B (2022-06-29)
G [auth C]	SCOP2B Superfamily	Sialidases	8071672	3001607	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Sialidases	8071672	3001607	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Sialidases	8071672	3001607	SCOP2B (2022-06-29)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
C [auth L], F [auth I], I [auth J], L [auth K]	Light Chain	IGKV1	Kappa	neuraminidase	SAbDab (2025-11-07)
B [auth H], E, H [auth F], K [auth G]	Heavy Chain	IGHV4	-	neuraminidase	SAbDab (2025-11-07)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D [auth B], G [auth C], J [auth D]	PF00064	Neuraminidase (Neur)	Neuraminidase	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth L], F [auth I], I [auth J], L [auth K]	DA03E17 Fab light chain	-	-	-
B [auth H], E, H [auth F], K [auth G]	DA03E17 Fab heavy chain	-	-	-
A, D [auth B], G [auth C], J [auth D]	Neuraminidase	cation binding ion binding binding metal ion binding small molecule binding hydrolase activity, acting on glycosyl bonds alpha-sialidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity exo-alpha-sialidase activity catalytic activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process biological process involved in interspecies interaction between organisms non-lytic viral release viral budding viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly exit from host cell viral process viral budding from plasma membrane carbohydrate metabolic process primary metabolic process metabolic process cellular process biological process involved in interspecies interaction between organisms non-lytic viral release viral budding viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly exit from host cell viral process viral budding from plasma membrane viral release from host cell	cellular anatomical structure membrane host cell plasma membrane host cellular component host cell part host cell membrane other organism part virion component virion membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D [auth B], G [auth C], J [auth D]	IPR001860	Glycoside hydrolase, family 34	Family
A, D [auth B], G [auth C], J [auth D]	IPR033654	Sialidase, Influenza viruses A/B	Domain
A, D [auth B], G [auth C], J [auth D]	IPR036278	Sialidase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.