9D72 | pdb_00009d72

CryoEM structure of anti-MHC-I Fab M1/42 complex with H2-Dd


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth A]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054617 3000071 SCOP2B (2022-06-29)
D [auth A]SCOP2B SuperfamilyMHC antigen-recognition domain 8055650 3000521 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054571 3000071 SCOP2B (2022-06-29)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
E [auth H]Heavy ChainIGHV8 -beta-2-microglobulin | h-2 class i histocompatibility antigen, d-d alpha chainSAbDab (2026-02-27)
B [auth L]Light ChainIGKV14 Kappabeta-2-microglobulin | h-2 class i histocompatibility antigen, d-d alpha chainSAbDab (2026-02-27)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth A]PF00129Class I Histocompatibility antigen, domains alpha 1 and 2 (MHC_I)Class I Histocompatibility antigen, domains alpha 1 and 2Domain
D [auth A]PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
A [auth B]PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E [auth H]Fab M1/42 Heavy Chain---
D [auth A]H-2 class I histocompatibility antigen, D-D alpha chain-
C [auth P]Surface protein gp120
B [auth L]Fab M1/42 Light Chain---
A [auth B]Beta-2-microglobulin

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth A]IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
D [auth A]IPR050208Antigen-presenting and immune regulatory MHC class I-relatedFamily
D [auth A]IPR037055MHC class I-like antigen recognition-like superfamilyHomologous Superfamily
D [auth A]IPR003597Immunoglobulin C1-setDomain
D [auth A]IPR010579MHC class I, alpha chain, C-terminalDomain
D [auth A]IPR013783Immunoglobulin-like foldHomologous Superfamily
D [auth A]IPR011161MHC class I-like antigen recognition-likeDomain
D [auth A]IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
D [auth A]IPR007110Immunoglobulin-like domainDomain
D [auth A]IPR001039MHC class I alpha chain, alpha1 alpha2 domainsDomain
D [auth A]IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
C [auth P]IPR000777Human immunodeficiency virus 1, envelope glycoprotein Gp120Domain
C [auth P]IPR036377Gp120 core superfamilyHomologous Superfamily
C [auth P]IPR000328Retroviral envelope protein GP41-likeDomain
C [auth P]IPR037527Envelope glycoprotein Gp160Family
A [auth B]IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A [auth B]IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
A [auth B]IPR013783Immunoglobulin-like foldHomologous Superfamily
A [auth B]IPR007110Immunoglobulin-like domainDomain
A [auth B]IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
A [auth B]IPR003597Immunoglobulin C1-setDomain
A [auth B]IPR015707Beta-2-MicroglobulinFamily