9DJW | pdb_00009djw

X-ray crystal structure of TNFa-VNAR D1 complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth 0]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
B [auth 1]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
CB [auth u]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
DA [auth V]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
DB [auth v]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
EA [auth W]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
F [auth 5]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
G [auth 6]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
H [auth 7]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
HB [auth z]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
KA [auth c]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
L [auth D]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
LA [auth d]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
M [auth E]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
N [auth F]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
PA [auth h]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
QA [auth i]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
R [auth J]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
RA [auth j]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
S [auth K]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
T [auth L]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
VA [auth n]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
WA [auth o]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
X [auth P]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
XA [auth p]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
Y [auth Q]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
Z [auth R]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
BB [auth t]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
FA [auth X]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
JA [auth b]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054521 3000071 SCOP2B (2022-06-29)
AA [auth S]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
AB [auth s]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
BA [auth T]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
C [auth 2]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
CA [auth U]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
D [auth 3]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
EB [auth w]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
FB [auth x]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
GA [auth Y]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
GB [auth y]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
I [auth A]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
IA [auth a]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
J [auth B]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
K [auth C]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
NA [auth f]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
O [auth G]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
OA [auth g]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
Q [auth I]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
TA [auth l]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
U [auth M]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
UA [auth m]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
V [auth N]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
YA [auth q]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
ZA [auth r]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
HA [auth Z]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
MA [auth e]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
P [auth H]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
SA [auth k]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)
W [auth O]SCOP2B SuperfamilyTNF-like 8041219 3000061 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00229TNF(Tumour Necrosis Factor) family (TNF)TNF(Tumour Necrosis Factor) familyDomain
PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Domain
PF00229TNF(Tumour Necrosis Factor) family (TNF)TNF(Tumour Necrosis Factor) familyDomain
PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Antigen receptor
Tumor necrosis factor

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR051006T cell receptor variable domainFamily
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR013106Immunoglobulin V-set domainDomain
IPR003599Immunoglobulin domain subtypeDomain
IPR007110Immunoglobulin-like domainDomain
IPR008983Tumour necrosis factor-like domain superfamilyHomologous Superfamily
IPR021184Tumour necrosis factor, conserved siteConserved Site
IPR006053Tumour necrosis factorFamily
IPR002959Tumour necrosis factor alphaFamily
IPR006052Tumour necrosis factor domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP01375