9F2J | pdb_00009f2j

Cryo-EM structure of SV2B-BoNT/A1 complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth B]SCOP2B SuperfamilyClostridium neurotoxins, coiled-coil domain 8039654 3001677 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilySTI-like 8042037 3000715 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyMetalloproteases (zincins), catalytic domain 8044155 3001975 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyConcanavalin A-like lectins/glucanases 8041451 3000120 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B]PF07951Clostridium neurotoxin, C-terminal receptor binding (Toxin_R_bind_C)Clostridium neurotoxin, C-terminal receptor bindingThe Clostridium neurotoxin family is composed of tetanus neurotoxins and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (Pfam:PF01742), the central tra ...The Clostridium neurotoxin family is composed of tetanus neurotoxins and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (Pfam:PF01742), the central translocation domains and two receptor binding domains [1]. This domain is the C-terminal receptor binding domain, which adopts a modified beta-trefoil fold with a six stranded beta-barrel and a beta-hairpin triplet capping the domain [1]. The first step in the intoxication process is a binding event between this domains and the pre-synaptic nerve ending [1].
Domain
A [auth B]PF07952Clostridium neurotoxin, Translocation domain (Toxin_trans)Clostridium neurotoxin, Translocation domainThe Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (Pfam:PF01742), the central tra ...The Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (Pfam:PF01742), the central translocation domains and two receptor binding domains [1]. Subsequent to cell surface binding and receptor mediated endocytosis of the neurotoxin, an acid induced conformational change in the neurotoxin translocation domain is believed to allow the domain to penetrate the endosome and from a pore, thereby facilitating the passage of the catalytic domain across the membrane into the cytosol [1]. The structure of the translocation reveals a pair of helices that are 105 Angstroms long and is structurally distinct from other pore forming toxins [1].
Domain
A [auth B]PF07953Clostridium neurotoxin, N-terminal receptor binding (Toxin_R_bind_N)Clostridium neurotoxin, N-terminal receptor bindingThe Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (Pfam:PF01742), the central tran ...The Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (Pfam:PF01742), the central translocation domains and two receptor binding domains [1]. This domain is the N-terminal receptor binding domain,which is comprised of two seven-stranded beta-sheets sandwiched together to form a jelly role motif [1]. The role of this domain in receptor binding appears to be indirect.
Domain
A [auth B]PF01742Clostridial neurotoxin zinc protease (Peptidase_M27)Clostridial neurotoxin zinc protease- Family
B [auth A]PF07690Major Facilitator Superfamily (MFS_1)Major Facilitator Superfamily- Family
B [auth A]PF00083Sugar (and other) transporter (Sugar_tr)Sugar (and other) transporter- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B]Botulinum neurotoxin type A
B [auth A]Synaptic vesicle glycoprotein 2B

Membrane Protein Annotation: PDBTM PDBTM Database Homepage