9GE8 | pdb_00009ge8

Structure of E. coli YbbAP-TesA with bound ATP analogue

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth T]	SCOP2B Superfamily	SGNH hydrolase-like	8097992	3001315	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02687	FtsX-like permease C-terminal (FtsX)	FtsX-like permease C-terminal	This entry represents the C-terminal helices found in members of the ABC type 3 transporter family of permeases, including Cell division protein FtsX from Gram-negative and Gram-positive bacteria [1], Permease protein MacB [2], Lipoprotein-releasing ...	This entry represents the C-terminal helices found in members of the ABC type 3 transporter family of permeases, including Cell division protein FtsX from Gram-negative and Gram-positive bacteria [1], Permease protein MacB [2], Lipoprotein-releasing system transmembrane protein LolC (Swiss:P57382) which has been shown to transport lipids targeted to the outer membrane across the inner membrane [3]. This region contains three transmembrane helices.	Domain
B, C	PF00005	ABC transporter (ABC_tran)	ABC transporter	ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ...	ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain Pfam:PF00664. These four domains may belong to a single polypeptide as in Swiss:P13569, or belong in different polypeptide chains.	Domain
D [auth T]	PF00657	GDSL-like Lipase/Acylhydrolase (Lipase_GDSL)	GDSL-like Lipase/Acylhydrolase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Uncharacterized ABC transporter permease YbbP	-	-	cell periphery cellular anatomical structure plasma membrane membrane
B, C	Uncharacterized ABC transporter ATP-binding protein YbbA	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	-	-
D [auth T]	Thioesterase 1/protease 1/lysophospholipase L1	fatty acyl-[ACP] hydrolase activity hydrolase activity, acting on ester bonds thiolester hydrolase activity hydrolase activity catalytic activity peptidase activity catalytic activity, acting on a protein deacylase activity fatty acyl-CoA hydrolase activity long-chain fatty acyl-CoA hydrolase activity acyl-CoA hydrolase activity arylesterase activity carboxylic ester hydrolase activity identical protein binding fatty acyl-[ACP] hydrolase activity hydrolase activity, acting on ester bonds thiolester hydrolase activity hydrolase activity catalytic activity peptidase activity catalytic activity, acting on a protein deacylase activity fatty acyl-CoA hydrolase activity long-chain fatty acyl-CoA hydrolase activity acyl-CoA hydrolase activity arylesterase activity carboxylic ester hydrolase activity identical protein binding protein binding binding lysophospholipase activity phosphatidylcholine lysophospholipase activity phospholipase activity lipase activity	primary metabolic process metabolic process cellular process lipid metabolic process proteolysis protein metabolic process macromolecule metabolic process	cellular anatomical structure outer membrane-bounded periplasmic space cell envelope periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR049727	ABC transporter permease subunit YbbP	Family
A	IPR038766	Membrane component of ABC transporter, predicted	Family
A	IPR003838	ABC3 transporter permease, C-terminal	Domain
B, C	IPR003593	AAA+ ATPase domain	Domain
B, C	IPR017871	ABC transporter-like, conserved site	Conserved Site
B, C	IPR017911	MacB-like, ATP-binding domain	Domain
B, C	IPR003439	ABC transporter-like, ATP-binding domain	Domain
B, C	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
D [auth T]	IPR036514	SGNH hydrolase superfamily	Homologous Superfamily
D [auth T]	IPR051532	Diverse Ester Hydrolysis Enzymes	Family
D [auth T]	IPR008265	Lipase, GDSL, active site	Active Site
D [auth T]	IPR013830	SGNH hydrolase-type esterase domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.