9J5J | pdb_00009j5j

Cryo-EM structure of BTN2A1-BTN3A1-BTN3A2 in complex with gdTCR

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8081005 3000071 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyConcanavalin A-like lectins/glucanases 8060022 3000120 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B,
H [auth I]		PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Domain
PF22705Butyrophilin subfamily 3 member A2-like, Ig-C domain (C2-set_3)Butyrophilin subfamily 3 member A2-like, Ig-C domainThis domain is found in human Butyrophilin subfamily 3 member A2 (BTN3A2), a protein that plays a role in T-cell responses in the adaptive immune response. BTN3A2 shows two extracellular domains: an N-terminal Ig-V like domain (Pfam:PF07686) and a C- ...This domain is found in human Butyrophilin subfamily 3 member A2 (BTN3A2), a protein that plays a role in T-cell responses in the adaptive immune response. BTN3A2 shows two extracellular domains: an N-terminal Ig-V like domain (Pfam:PF07686) and a C-terminal Ig-C type domain that is located in the centre of the protein sequence [6].
Domain
PF00622SPRY domain (SPRY)SPRY domainSPRY Domain is named from SPla and the RYanodine Receptor and it is found in many eukaryotic proteins with a wide range of functions. It is a protein-interaction module involved in many important signalling pathways like RNA processing, regulation of ...SPRY Domain is named from SPla and the RYanodine Receptor and it is found in many eukaryotic proteins with a wide range of functions. It is a protein-interaction module involved in many important signalling pathways like RNA processing, regulation of histone H3 methylation, innate immunity or embryonic development [1,2,3,4]. It can be divided into 11 subfamilies based on amino acid sequence similarity or the presence of additional protein domains. The greater SPRY family is divided into the SPRY/B30.2 (which contains a PRY extension at the N-terminal) and SPRY-only sub-families which are preceded by a subdomain that is structurally similar to the PRY region [2]. SPRY/B30.2 structures revealed a bent beta-sandwich fold comprised of two beta-sheets. Distant homologues are domains in butyrophilin/ marenostrin/pyrin [1].
Domain
PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Domain
PF22705Butyrophilin subfamily 3 member A2-like, Ig-C domain (C2-set_3)Butyrophilin subfamily 3 member A2-like, Ig-C domainThis domain is found in human Butyrophilin subfamily 3 member A2 (BTN3A2), a protein that plays a role in T-cell responses in the adaptive immune response. BTN3A2 shows two extracellular domains: an N-terminal Ig-V like domain (Pfam:PF07686) and a C- ...This domain is found in human Butyrophilin subfamily 3 member A2 (BTN3A2), a protein that plays a role in T-cell responses in the adaptive immune response. BTN3A2 shows two extracellular domains: an N-terminal Ig-V like domain (Pfam:PF07686) and a C-terminal Ig-C type domain that is located in the centre of the protein sequence [6].
Domain
PF13765SPRY-associated domain (PRY)SPRY-associated domainPRY is a 50-60 amino acids domain associated with SPRY domains, adjacent to its N-terminal. PRY and SPRY domains are structurally very similar and consist of a beta sandwich fold [1,2,3]. Distant homologues are domains in butyrophilin/marenostrin/py ...PRY is a 50-60 amino acids domain associated with SPRY domains, adjacent to its N-terminal. PRY and SPRY domains are structurally very similar and consist of a beta sandwich fold [1,2,3]. Distant homologues are domains in butyrophilin/marenostrin/pyrin, evolutionarily more ancient than SPRY/B30.2 counterpart.
Domain
E,
F [auth G]		PF00622SPRY domain (SPRY)SPRY domainSPRY Domain is named from SPla and the RYanodine Receptor and it is found in many eukaryotic proteins with a wide range of functions. It is a protein-interaction module involved in many important signalling pathways like RNA processing, regulation of ...SPRY Domain is named from SPla and the RYanodine Receptor and it is found in many eukaryotic proteins with a wide range of functions. It is a protein-interaction module involved in many important signalling pathways like RNA processing, regulation of histone H3 methylation, innate immunity or embryonic development [1,2,3,4]. It can be divided into 11 subfamilies based on amino acid sequence similarity or the presence of additional protein domains. The greater SPRY family is divided into the SPRY/B30.2 (which contains a PRY extension at the N-terminal) and SPRY-only sub-families which are preceded by a subdomain that is structurally similar to the PRY region [2]. SPRY/B30.2 structures revealed a bent beta-sandwich fold comprised of two beta-sheets. Distant homologues are domains in butyrophilin/ marenostrin/pyrin [1].
Domain
E,
F [auth G]		PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Domain
E,
F [auth G]		PF22705Butyrophilin subfamily 3 member A2-like, Ig-C domain (C2-set_3)Butyrophilin subfamily 3 member A2-like, Ig-C domainThis domain is found in human Butyrophilin subfamily 3 member A2 (BTN3A2), a protein that plays a role in T-cell responses in the adaptive immune response. BTN3A2 shows two extracellular domains: an N-terminal Ig-V like domain (Pfam:PF07686) and a C- ...This domain is found in human Butyrophilin subfamily 3 member A2 (BTN3A2), a protein that plays a role in T-cell responses in the adaptive immune response. BTN3A2 shows two extracellular domains: an N-terminal Ig-V like domain (Pfam:PF07686) and a C-terminal Ig-C type domain that is located in the centre of the protein sequence [6].
Domain
E,
F [auth G]		PF13765SPRY-associated domain (PRY)SPRY-associated domainPRY is a 50-60 amino acids domain associated with SPRY domains, adjacent to its N-terminal. PRY and SPRY domains are structurally very similar and consist of a beta sandwich fold [1,2,3]. Distant homologues are domains in butyrophilin/marenostrin/py ...PRY is a 50-60 amino acids domain associated with SPRY domains, adjacent to its N-terminal. PRY and SPRY domains are structurally very similar and consist of a beta sandwich fold [1,2,3]. Distant homologues are domains in butyrophilin/marenostrin/pyrin, evolutionarily more ancient than SPRY/B30.2 counterpart.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
G [auth H]		d domain of gdTCR---
B,
H [auth I]		g domain of gdTCR
Butyrophilin subfamily 3 member A2
Butyrophilin subfamily 3 member A1
E,
F [auth G]		Butyrophilin subfamily 2 member A1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B,
H [auth I]		IPR003597Immunoglobulin C1-setDomain
B,
H [auth I]		IPR013783Immunoglobulin-like foldHomologous Superfamily
B,
H [auth I]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
B,
H [auth I]		IPR051117T cell receptor gamma variable/constant regionFamily
B,
H [auth I]		IPR007110Immunoglobulin-like domainDomain
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR053896Butyrophilin subfamily 3 member A2-like, Ig-C domainDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR013106Immunoglobulin V-set domainDomain
IPR050504Immunoglobulin superfamily BTN/MOG domain-containing proteinFamily
IPR003599Immunoglobulin domain subtypeDomain
IPR007110Immunoglobulin-like domainDomain
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR001870B30.2/SPRY domainDomain
IPR006574SPRY-associatedDomain
IPR003879Butyrophylin-like, SPRY domainDomain
IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
IPR053896Butyrophilin subfamily 3 member A2-like, Ig-C domainDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR013106Immunoglobulin V-set domainDomain
IPR050504Immunoglobulin superfamily BTN/MOG domain-containing proteinFamily
IPR003599Immunoglobulin domain subtypeDomain
IPR043136B30.2/SPRY domain superfamilyHomologous Superfamily
IPR007110Immunoglobulin-like domainDomain
IPR037954Butyrophilin subfamily 3, PRY/SPRY domainDomain
IPR003877SPRY domainDomain
E,
F [auth G]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
E,
F [auth G]		IPR001870B30.2/SPRY domainDomain
E,
F [auth G]		IPR006574SPRY-associatedDomain
E,
F [auth G]		IPR037958Butyrophilin subfamily 1/2, SPRY/PRY domainDomain
E,
F [auth G]		IPR003879Butyrophylin-like, SPRY domainDomain
E,
F [auth G]		IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
E,
F [auth G]		IPR053896Butyrophilin subfamily 3 member A2-like, Ig-C domainDomain
E,
F [auth G]		IPR013783Immunoglobulin-like foldHomologous Superfamily
E,
F [auth G]		IPR013106Immunoglobulin V-set domainDomain
E,
F [auth G]		IPR050504Immunoglobulin superfamily BTN/MOG domain-containing proteinFamily
E,
F [auth G]		IPR003599Immunoglobulin domain subtypeDomain
E,
F [auth G]		IPR043136B30.2/SPRY domain superfamilyHomologous Superfamily
E,
F [auth G]		IPR007110Immunoglobulin-like domainDomain
E,
F [auth G]		IPR003877SPRY domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
Pharos:  P78410
Pharos:  O00481
E,
F [auth G]		Pharos:  Q7KYR7

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
MemProtMDAnnotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALImmune ReceptorsButyrophilin BTN2A1-BTN3A1-BTN3A2 in complex with TCRγδ