9R11 | pdb_00009r11

Structure of the PRYSPRY domain of human MID2, crystal form II


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B],
B [auth A]
PF00622SPRY domain (SPRY)SPRY domainSPRY Domain is named from SPla and the RYanodine Receptor and it is found in many eukaryotic proteins with a wide range of functions. It is a protein-interaction module involved in many important signalling pathways like RNA processing, regulation of ...SPRY Domain is named from SPla and the RYanodine Receptor and it is found in many eukaryotic proteins with a wide range of functions. It is a protein-interaction module involved in many important signalling pathways like RNA processing, regulation of histone H3 methylation, innate immunity or embryonic development [1,2,3,4]. It can be divided into 11 subfamilies based on amino acid sequence similarity or the presence of additional protein domains. The greater SPRY family is divided into the SPRY/B30.2 (which contains a PRY extension at the N-terminal) and SPRY-only sub-families which are preceded by a subdomain that is structurally similar to the PRY region [2]. SPRY/B30.2 structures revealed a bent beta-sandwich fold comprised of two beta-sheets. Distant homologues are domains in butyrophilin/ marenostrin/pyrin [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B],
B [auth A]
Probable E3 ubiquitin-protein ligase MID2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B],
B [auth A]
IPR047063Probable E3 ubiquitin-protein ligase MID2, B-box-type 2 zinc fingerDomain
A [auth B],
B [auth A]
IPR035752TRIM1, PRY/SPRY domainDomain
A [auth B],
B [auth A]
IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
A [auth B],
B [auth A]
IPR017903COS domainDomain
A [auth B],
B [auth A]
IPR050617E3 ubiquitin-protein ligases and FN3/SPRY domain-containing proteinsFamily
A [auth B],
B [auth A]
IPR043136B30.2/SPRY domain superfamilyHomologous Superfamily
A [auth B],
B [auth A]
IPR033491Probable E3 ubiquitin-protein ligase MID2, RING finger, HC subclassDomain
A [auth B],
B [auth A]
IPR003877SPRY domainDomain
A [auth B],
B [auth A]
IPR017907Zinc finger, RING-type, conserved siteConserved Site
A [auth B],
B [auth A]
IPR000315B-box-type zinc fingerDomain
A [auth B],
B [auth A]
IPR001870B30.2/SPRY domainDomain
A [auth B],
B [auth A]
IPR003961Fibronectin type IIIDomain
A [auth B],
B [auth A]
IPR027370Zinc finger, RING-type, eukaryoticDomain
A [auth B],
B [auth A]
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
A [auth B],
B [auth A]
IPR003879Butyrophylin-like, SPRY domainDomain
A [auth B],
B [auth A]
IPR047064Probable E3 ubiquitin-protein ligase MID2, B-box-type 1 zinc fingerDomain
A [auth B],
B [auth A]
IPR040859Midline-1, COS domainDomain
A [auth B],
B [auth A]
IPR013783Immunoglobulin-like foldHomologous Superfamily
A [auth B],
B [auth A]
IPR003649B-box, C-terminalDomain
A [auth B],
B [auth A]
IPR001841Zinc finger, RING-typeDomain
A [auth B],
B [auth A]
IPR036116Fibronectin type III superfamilyHomologous Superfamily