9SL7 | pdb_00009sl7

Model of M. pneumoniae 70S transertion-like (stable RNAP)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth 2]	SCOP2B Superfamily	Ribosomal protein L36	8107602	3001346	SCOP2B (2022-06-29)
S [auth C]	SCOP2B Superfamily	Alpha-L RNA-binding motif	8107598	3001473	SCOP2B (2022-06-29)
V [auth F]	SCOP2B Superfamily	Ribosomal protein S7	8107618	3000799	SCOP2B (2022-06-29)
W [auth G]	SCOP2B Superfamily	Ribosomal protein S8	8107654	3000709	SCOP2B (2022-06-29)
X [auth H]	SCOP2B Superfamily	Ribosomal protein S5 domain 2-like	8107610	3000100	SCOP2B (2022-06-29)
Y [auth I]	SCOP2B Superfamily	Ribosomal protein S10	8107628	3001336	SCOP2B (2022-06-29)
AA [auth K]	SCOP2B Superfamily	Nucleic acid-binding proteins	8107620	3000135	SCOP2B (2022-06-29)
BA [auth L]	SCOP2B Superfamily	S13-like H2TH domain	8107648	3000053	SCOP2B (2022-06-29)
CA [auth M]	SCOP2B Superfamily	Glucocorticoid receptor-like (DNA-binding domain)	8107656	3000068	SCOP2B (2022-06-29)
DA [auth N]	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8107606	3001284	SCOP2B (2022-06-29)
FA [auth P]	SCOP2B Superfamily	Nucleic acid-binding proteins	8107664	3000135	SCOP2B (2022-06-29)
HA [auth R]	SCOP2B Superfamily	Ribosomal protein S19	8107622	3000686	SCOP2B (2022-06-29)
RA [auth b]	SCOP2B Superfamily	Translational proteins	8107626	3000811	SCOP2B (2022-06-29)
SA [auth c]	SCOP2B Superfamily	Ribosomal protein L4	8107624	3001146	SCOP2B (2022-06-29)
TA [auth d]	SCOP2B Superfamily	RL5-like	8107658	3001709	SCOP2B (2022-06-29)
XA [auth i]	SCOP2B Superfamily	Ribosomal protein L13	8107608	3001134	SCOP2B (2022-06-29)
YA [auth j]	SCOP2B Superfamily	50S Ribosomal protein L14-like	8107662	3000433	SCOP2B (2022-06-29)
ZA [auth k]	SCOP2B Superfamily	Ribosomal proteins L15p and L18e	8107650	3001045	SCOP2B (2022-06-29)
AB [auth l]	SCOP2B Superfamily	Ribosomal protein L16p/L10e	8107596	3000884	SCOP2B (2022-06-29)
BB [auth m]	SCOP2B Superfamily	Prokaryotic ribosomal protein L17	8107666	3000995	SCOP2B (2022-06-29)
CB [auth n]	SCOP2B Superfamily	Translational machinery components	8107652	3000571	SCOP2B (2022-06-29)
DB [auth o]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8107604	3000334	SCOP2B (2022-06-29)
EB [auth p]	SCOP2B Superfamily	Ribosomal protein L20	8107632	3000563	SCOP2B (2022-06-29)
FB [auth q]	SCOP2B Superfamily	l21p-like	8107634	3002005	SCOP2B (2022-06-29)
IB [auth t]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8107660	3000334	SCOP2B (2022-06-29)
JB [auth u]	SCOP2B Superfamily	Ribosomal L27 protein-like	8107616	3000539	SCOP2B (2022-06-29)
NB [auth y]	SCOP2B Superfamily	Zn-binding ribosomal proteins	8107612	3001320	SCOP2B (2022-06-29)
OB [auth z]	SCOP2B Superfamily	Zn-binding ribosomal proteins	8107630	3001320	SCOP2B (2022-06-29)
Z [auth J]	SCOP2B Superfamily	Translational machinery components	8107646	3000571	SCOP2B (2022-06-29)
B [auth 1]	SCOP2B Superfamily	L35p-like	8107614	3000790	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth 0]	PF00468	Ribosomal protein L34 (Ribosomal_L34)	Ribosomal protein L34	-	Family
C [auth 2]	PF00444	Ribosomal protein L36 (Ribosomal_L36)	Ribosomal protein L36		Domain
G [auth 6], M [auth AB]	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L)	RNA polymerase Rpb3/Rpb11 dimerisation domain	The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ...	The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation domain of the alpha subunit/Rpb3 is interrupted by an insert domain (Pfam:PF01000). Some of the alpha subunits also contain iron-sulphur binding domains (Pfam:PF00037). Rpb11 is found as a continuous domain. Members of this family include: alpha subunit from eubacteria, alpha subunits from chloroplasts, Rpb3 subunits from eukaryotes, Rpb11 subunits from eukaryotes, RpoD subunits from archaeal spp, and RpoL subunits from archaeal spp.	Domain
G [auth 6], M [auth AB]	PF01000	RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac)	RNA polymerase Rpb3/RpoA insert domain	Members of this family include: alpha subunit from eubacteria alpha subunits from chloroplasts Rpb3 subunits from eukaryotes RpoD subunits from archaeal	Domain
K [auth A]	PF03947	Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)	Ribosomal Proteins L2, C-terminal domain		Domain
K [auth A]	PF00318	Ribosomal protein S2 (Ribosomal_S2)	Ribosomal protein S2	-	Family
K [auth A]	PF00181	Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)	Ribosomal Proteins L2, RNA binding N-terminal domain		Domain
L [auth AA]	PF05066	HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH)	HB1, ASXL, restriction endonuclease HTH domain	-	Family
N [auth AC]	PF13184	NusA-like first KH domain (KH_NusA_1st)	NusA-like first KH domain	This entry represents the first K homology (KH) domain found in NusA transcription termination factors. KH domains bind RNA and can function in RNA recognition [1]. NusA binds to RNA polymerase alpha subunit and promotes termination at certain RNA ha ...	This entry represents the first K homology (KH) domain found in NusA transcription termination factors. KH domains bind RNA and can function in RNA recognition [1]. NusA binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures [2]. In prokaryotes, the N-terminal RNA polymerase-binding domain (NTD) is connected through a flexible hinge helix to three globular domains, the S1 and two K-homology (KH), KH1 and KH2. The KH domains of NusA belong to the type II KH RNA-binding domain superfamily [3].	Domain
N [auth AC]	PF26594	NusA-like second KH domain (KH_NusA_2nd)	NusA-like second KH domain	This entry represents the second K homology (KH) domain found in NusA transcription termination factors. KH domains bind RNA and can function in RNA recognition [1]. NusA binds to RNA polymerase alpha subunit and promotes termination at certain RNA h ...	This entry represents the second K homology (KH) domain found in NusA transcription termination factors. KH domains bind RNA and can function in RNA recognition [1]. NusA binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures [2]. In prokaryotes, the N-terminal RNA polymerase-binding domain (NTD) is connected through a flexible hinge helix to three globular domains, the S1 and two K-homology (KH), KH1 and KH2. The KH domains of NusA belong to the type II KH RNA-binding domain superfamily [3].	Domain
N [auth AC]	PF08529	NusA N-terminal domain (NusA_N)	NusA N-terminal domain	This domain represents the RNA polymerase binding domain of NusA.	Domain
Q [auth AF]	PF02357	Transcription termination factor nusG (NusG)	Transcription termination factor nusG		Domain
R [auth B]	PF07650	KH domain (KH_2)	KH domain		Domain
R [auth B]	PF00297	Ribosomal protein L3 (Ribosomal_L3)	Ribosomal protein L3	-	Family
R [auth B]	PF00189	Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)	Ribosomal protein S3, C-terminal domain	This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.	Domain
S [auth C]	PF00163	Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)	Ribosomal protein S4/S9 N-terminal domain	-	Family
S [auth C]	PF00573	Ribosomal protein L4/L1 family (Ribosomal_L4)	Ribosomal protein L4/L1 family	-	Family
S [auth C]	PF01479	S4 domain (S4)	S4 domain	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.	Domain
T [auth D]	PF03719	Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)	Ribosomal protein S5, C-terminal domain		Domain
T [auth D]	PF00673	ribosomal L5P family C-terminus (Ribosomal_L5_C)	ribosomal L5P family C-terminus	This region is found associated with Pfam:PF00281.	Domain
T [auth D]	PF00333	Ribosomal protein S5, N-terminal domain (Ribosomal_S5)	Ribosomal protein S5, N-terminal domain		Domain
U [auth E]	PF00347	Ribosomal protein L6 (Ribosomal_L6)	Ribosomal protein L6		Domain
U [auth E]	PF01250	Ribosomal protein S6 (Ribosomal_S6)	Ribosomal protein S6		Domain
V [auth F]	PF03948	Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)	Ribosomal protein L9, C-terminal domain		Domain
V [auth F]	PF00177	Ribosomal protein S7p/S5e (Ribosomal_S7)	Ribosomal protein S7p/S5e	This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.	Domain
W [auth G]	PF00410	Ribosomal protein S8 (Ribosomal_S8)	Ribosomal protein S8		Domain
X [auth H]	PF03946	Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)	Ribosomal protein L11, N-terminal domain	The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.	Domain
X [auth H]	PF00380	Ribosomal protein S9/S16 (Ribosomal_S9)	Ribosomal protein S9/S16	-	Family
X [auth H]	PF00298	Ribosomal protein L11, RNA binding domain (Ribosomal_L11)	Ribosomal protein L11, RNA binding domain		Domain
Y [auth I]	PF00338	Ribosomal protein S10p/S20e (Ribosomal_S10)	Ribosomal protein S10p/S20e	This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.	Domain
Y [auth I]	PF00572	Ribosomal protein L13 (Ribosomal_L13)	Ribosomal protein L13	-	Family
AA [auth K]	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A	This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins.	Domain
AA [auth K]	PF00164	Ribosomal protein S12/S23 (Ribosom_S12_S23)	Ribosomal protein S12/S23	This protein is known as S12 in bacteria and archaea and S23 in eukaryotes.	Domain
BA [auth L]	PF00416	Ribosomal protein S13/S18 (Ribosomal_S13)	Ribosomal protein S13/S18	-	Family
CA [auth M]	PF01196	Ribosomal protein L17 (Ribosomal_L17)	Ribosomal protein L17	-	Family
CA [auth M]	PF00253	Ribosomal protein S14p/S29e (Ribosomal_S14)	Ribosomal protein S14p/S29e	-	Family
DA [auth N]	PF00861	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast	-	Family
DA [auth N]	PF00312	Ribosomal protein S15 (Ribosomal_S15)	Ribosomal protein S15		Domain
EA [auth O]	PF00886	Ribosomal protein S16 (Ribosomal_S16)	Ribosomal protein S16	-	Family
EA [auth O]	PF01245	Ribosomal protein L19 (Ribosomal_L19)	Ribosomal protein L19	-	Family
FA [auth P]	PF00453	Ribosomal protein L20 (Ribosomal_L20)	Ribosomal protein L20	-	Family
FA [auth P]	PF00366	Ribosomal protein S17 (Ribosomal_S17)	Ribosomal protein S17		Domain
GA [auth Q]	PF01084	Ribosomal protein S18 (Ribosomal_S18)	Ribosomal protein S18	-	Family
HA [auth R]	PF00237	Ribosomal protein L22p/L17e (Ribosomal_L22)	Ribosomal protein L22p/L17e	This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.	Domain
HA [auth R]	PF00203	Ribosomal protein S19 (Ribosomal_S19)	Ribosomal protein S19		Domain
JA [auth T]	PF17136	Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)	Large ribosomal subunit protein uL24, C-terminal domain	This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...	This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].	Domain
JA [auth T]	PF00467	KOW motif (KOW)	KOW motif	-	Family
KA [auth U]	PF00466	Ribosomal protein L10 (Ribosomal_L10)	Ribosomal protein L10	-	Family
KA [auth U]	PF01016	Ribosomal L27 protein (Ribosomal_L27)	Ribosomal L27 protein	-	Family
LA [auth V], MA [auth W], NA [auth X], OA [auth Y]	PF00831	Ribosomal L29 protein (Ribosomal_L29)	Ribosomal L29 protein	-	Family
LA [auth V], MA [auth W], NA [auth X], OA [auth Y]	PF16320	Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N)	Ribosomal protein L7/L12 dimerisation domain	This is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1].	Domain
LA [auth V], MA [auth W], NA [auth X], OA [auth Y]	PF01197	Ribosomal protein L31 (Ribosomal_L31)	Ribosomal protein L31	-	Family
LA [auth V], MA [auth W], NA [auth X], OA [auth Y]	PF01783	Ribosomal L32p protein family (Ribosomal_L32p)	Ribosomal L32p protein family	-	Family
LA [auth V], MA [auth W], NA [auth X], OA [auth Y]	PF00830	Ribosomal L28 family (Ribosomal_L28)	Ribosomal L28 family	-	Family
PA [auth Z]	PF00623	RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2)	RNA polymerase Rpb1, domain 2	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site ...	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site. The invariant motif -NADFDGD- binds the active site magnesium ion [1,2].	Domain
PA [auth Z]	PF05000	RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4)	RNA polymerase Rpb1, domain 4	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel do ...	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel domain. The funnel contain the binding site for some elongation factors [1,2].	Domain
PA [auth Z]	PF04983	RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3)	RNA polymerase Rpb1, domain 3	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore doma ...	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore domain. The 3' end of RNA is positioned close to this domain. The pore delimited by this domain is thought to act as a channel through which nucleotides enter the active site and/or where the 3' end of the RNA may be extruded during back-tracking [1,2].	Domain
PA [auth Z]	PF04998	RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5)	RNA polymerase Rpb1, domain 5	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontin ...	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontinuous cleft domain that is required to from the central cleft or channel where the DNA is bound [1,2].	Domain
PA [auth Z]	PF04997	RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1)	RNA polymerase Rpb1, domain 1	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp dom ...	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp domain, which a mobile domain involved in positioning the DNA, maintenance of the transcription bubble and positioning of the nascent RNA strand [1,2].	Domain
IA [auth S]	PF01649	Ribosomal protein S20 (Ribosomal_S20p)	Ribosomal protein S20	-	Family
IA [auth S]	PF00276	Ribosomal protein L23 (Ribosomal_L23)	Ribosomal protein L23	-	Family
Z [auth J]	PF00411	Ribosomal protein S11 (Ribosomal_S11)	Ribosomal protein S11	-	Family
B [auth 1]	PF01632	Ribosomal protein L35 (Ribosomal_L35p)	Ribosomal protein L35	-	Family
J [auth 9]	PF10385	RNA polymerase beta subunit external 1 domain (RNA_pol_Rpb2_45)	RNA polymerase beta subunit external 1 domain	RNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared with three in eukaryotes (not including mitochondrial or chloroplast polymerases). This domain in prokaryotes spans the gap between ...	RNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared with three in eukaryotes (not including mitochondrial or chloroplast polymerases). This domain in prokaryotes spans the gap between domains 4 and 5 of the yeast protein. It is also known as the external 1 region of the polymerase and is bound in association with the external 2 region [1].	Domain
J [auth 9]	PF04560	RNA polymerase Rpb2, domain 7 (RNA_pol_Rpb2_7)	RNA polymerase Rpb2, domain 7	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA p ...	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain comprised of the structural domains anchor and clamp [1]. The clamp region (C-terminal) contains a zinc-binding motif [1]. The clamp region is named due to its interaction with the clamp domain found in Rpb1. The domain also contains a region termed "switch 4". The switches within the polymerase are thought to signal different stages of transcription [1].	Domain
J [auth 9]	PF04565	RNA polymerase Rpb2, domain 3 (RNA_pol_Rpb2_3)	RNA polymerase Rpb2, domain 3	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is ...	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site [1].	Domain
J [auth 9]	PF04563	RNA polymerase beta subunit (RNA_pol_Rpb2_1)	RNA polymerase beta subunit	-	Family
J [auth 9]	PF00562	RNA polymerase Rpb2, domain 6 (RNA_pol_Rpb2_6)	RNA polymerase Rpb2, domain 6	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain ...	RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain and the wall domain [1]. The hybrid binding domain binds the nascent RNA strand / template DNA strand in the Pol II transcription elongation complex. This domain contains the important structural motifs, switch 3 and the flap loop and binds an active site metal ion[1]. This domain is also involved in binding to Rpb1 and Rpb3 [1]. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 2 (DRII).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 0]	Large ribosomal subunit protein bL34	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
C [auth 2]	50S ribosomal protein L36	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
D [auth 3]	23S ribosomal RNA	-	-	-
E [auth 4]	5S ribosomal RNA	-	-	-
F [auth 5]	16S ribosomal RNA	-	-	-
G [auth 6], M [auth AB]	DNA-directed RNA polymerase subunit alpha	DNA binding binding nucleic acid binding protein binding protein dimerization activity DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm
H [auth 7]	tRNA-Phe	-	-	-
I [auth 8]	SecDF	-	-	cell periphery cellular anatomical structure plasma membrane membrane
K [auth A]	Small ribosomal subunit protein uS2	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
L [auth AA]	Probable DNA-directed RNA polymerase subunit delta	DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	-
N [auth AC]	Transcription termination/antitermination protein NusA	transcription regulator activity DNA-binding transcription factor activity RNA binding binding nucleic acid binding	negative regulation of termination of DNA-templated transcription regulation of cellular process negative regulation of biological process protein-containing complex disassembly positive regulation of macromolecule biosynthetic process regulation of protein-containing complex disassembly regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of macromolecule metabolic process negative regulation of nucleobase-containing compound metabolic process negative regulation of termination of DNA-templated transcription regulation of cellular process negative regulation of biological process protein-containing complex disassembly positive regulation of macromolecule biosynthetic process regulation of protein-containing complex disassembly regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of macromolecule metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process cellular component disassembly negative regulation of DNA-templated transcription regulation of biological process negative regulation of cellular component organization negative regulation of metabolic process primary metabolic process regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process regulation of termination of DNA-templated transcription regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process regulation of cellular component organization transcription antitermination positive regulation of biological process RNA metabolic process DNA-templated transcription termination RNA biosynthetic process cellular component organization nucleic acid biosynthetic process positive regulation of biosynthetic process negative regulation of protein-containing complex disassembly negative regulation of cellular process cellular component organization or biogenesis positive regulation of cellular process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process protein-containing complex organization biological regulation regulation of macromolecule metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process positive regulation of gene expression negative regulation of biosynthetic process cellular process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol
O [auth AD]	DNA chain A	-	-	-
P [auth AE]	DNA chain B	-	-	-
Q [auth AF]	Transcription termination/antitermination protein NusG	-	negative regulation of termination of DNA-templated transcription regulation of cellular process negative regulation of biological process protein-containing complex disassembly positive regulation of macromolecule biosynthetic process regulation of protein-containing complex disassembly regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of macromolecule metabolic process negative regulation of nucleobase-containing compound metabolic process negative regulation of termination of DNA-templated transcription regulation of cellular process negative regulation of biological process protein-containing complex disassembly positive regulation of macromolecule biosynthetic process regulation of protein-containing complex disassembly regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of macromolecule metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process cellular component disassembly negative regulation of DNA-templated transcription regulation of biological process negative regulation of cellular component organization negative regulation of metabolic process primary metabolic process regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process regulation of termination of DNA-templated transcription regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process regulation of cellular component organization transcription antitermination positive regulation of biological process RNA metabolic process DNA-templated transcription termination RNA biosynthetic process cellular component organization nucleic acid biosynthetic process positive regulation of biosynthetic process negative regulation of protein-containing complex disassembly negative regulation of cellular process cellular component organization or biogenesis positive regulation of cellular process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process protein-containing complex organization biological regulation regulation of macromolecule metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process positive regulation of gene expression negative regulation of biosynthetic process cellular process DNA-templated transcription elongation regulation of DNA-templated transcription elongation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol
R [auth B]	Small ribosomal subunit protein uS3	RNA binding binding nucleic acid binding mRNA binding rRNA binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
S [auth C]	Small ribosomal subunit protein uS4	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
T [auth D]	Small ribosomal subunit protein uS5	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
U [auth E]	Small ribosomal subunit protein bS6	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
V [auth F]	Small ribosomal subunit protein uS7	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
W [auth G]	Small ribosomal subunit protein uS8	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
X [auth H]	Small ribosomal subunit protein uS9	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
Y [auth I]	Small ribosomal subunit protein uS10	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
AA [auth K]	Small ribosomal subunit protein uS12	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
BA [auth L]	Small ribosomal subunit protein uS13	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle ribonucleoprotein complex organelle membraneless organelle ribosome
CA [auth M]	Small ribosomal subunit protein uS14	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding structural molecule activity structural constituent of ribosome RNA binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
DA [auth N]	Small ribosomal subunit protein uS15	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
EA [auth O]	Small ribosomal subunit protein bS16	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
FA [auth P]	Small ribosomal subunit protein uS17	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
GA [auth Q]	Small ribosomal subunit protein bS18	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
HA [auth R]	Small ribosomal subunit protein uS19	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
JA [auth T]	Small ribosomal subunit protein bS21	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
KA [auth U]	50S ribosomal protein L10	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome large ribosomal subunit
LA [auth V], MA [auth W], NA [auth X], OA [auth Y]	Large ribosomal subunit protein bL12	RNA binding binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
PA [auth Z]	DNA-directed RNA polymerase subunit beta'	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding DNA binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding DNA binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups transition metal ion binding zinc ion binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	-
QA [auth a]	Large ribosomal subunit protein uL2	RNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome transferase activity catalytic activity	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome large ribosomal subunit
RA [auth b]	Large ribosomal subunit protein uL3	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
SA [auth c]	Large ribosomal subunit protein uL4	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
TA [auth d]	Large ribosomal subunit protein uL5	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
UA [auth e]	Large ribosomal subunit protein uL6	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
VA [auth f]	Large ribosomal subunit protein bL9	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
WA [auth h]	Large ribosomal subunit protein uL11	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
XA [auth i]	Large ribosomal subunit protein uL13	RNA binding binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome	regulation of cellular process negative regulation of biological process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process regulation of cellular process negative regulation of biological process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
YA [auth j]	50S ribosomal protein L14	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
ZA [auth k]	Large ribosomal subunit protein uL15	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
AB [auth l]	Large ribosomal subunit protein uL16	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
BB [auth m]	Large ribosomal subunit protein bL17	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
CB [auth n]	Large ribosomal subunit protein uL18	RNA binding binding rRNA binding 5S rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
DB [auth o]	Large ribosomal subunit protein bL19	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
EB [auth p]	Large ribosomal subunit protein bL20	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
FB [auth q]	Large ribosomal subunit protein bL21	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
GB [auth r]	Large ribosomal subunit protein uL22	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
HB [auth s]	Large ribosomal subunit protein uL23	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
IB [auth t]	50S ribosomal protein L24	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
JB [auth u]	Large ribosomal subunit protein bL27	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
KB [auth v]	Large ribosomal subunit protein bL28	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
LB [auth w]	Large ribosomal subunit protein uL29	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
MB [auth x]	Large ribosomal subunit protein bL31	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
NB [auth y]	Large ribosomal subunit protein bL32	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome large ribosomal subunit
OB [auth z]	Large ribosomal subunit protein bL33A	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
IA [auth S]	Small ribosomal subunit protein bS20	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
Z [auth J]	Small ribosomal subunit protein uS11	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
B [auth 1]	50S ribosomal protein L35	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
J [auth 9]	DNA-directed RNA polymerase subunit beta	DNA binding binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups ribonucleoside binding nucleoside binding DNA binding binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups ribonucleoside binding nucleoside binding heterocyclic compound binding carbohydrate derivative binding small molecule binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 0]	IPR020939	Large ribosomal subunit protein bL34, conserved site	Conserved Site
A [auth 0]	IPR000271	Large ribosomal subunit protein bL34	Family
C [auth 2]	IPR000473	Large ribosomal subunit protein bL36	Family
C [auth 2]	IPR035977	Large ribosomal subunit protein bL36 superfamily	Homologous Superfamily
G [auth 6], M [auth AB]	IPR011773	DNA-directed RNA polymerase, alpha subunit	Family
G [auth 6], M [auth AB]	IPR011262	DNA-directed RNA polymerase, insert domain	Domain
G [auth 6], M [auth AB]	IPR011260	RNA polymerase, alpha subunit, C-terminal	Domain
G [auth 6], M [auth AB]	IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	Domain
G [auth 6], M [auth AB]	IPR036643	DNA-directed RNA polymerase, insert domain superfamily	Homologous Superfamily
G [auth 6], M [auth AB]	IPR036603	RNA polymerase, RBP11-like subunit	Homologous Superfamily
K [auth A]	IPR005706	Small ribosomal subunit protein uS2, bacteria/mitochondria/plastid	Family
K [auth A]	IPR023591	Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily	Homologous Superfamily
K [auth A]	IPR018130	Small ribosomal subunit protein uS2, conserved site	Conserved Site
K [auth A]	IPR001865	Small ribosomal subunit protein uS2	Family
L [auth AA]	IPR029757	DNA-directed RNA polymerase subunit delta	Family
L [auth AA]	IPR038087	DNA-directed RNA polymerase subunit delta, N-terminal domain superfamily	Homologous Superfamily
L [auth AA]	IPR007759	ASXL, HARE-HTH domain	Domain
N [auth AC]	IPR036555	NusA, N-terminal domain superfamily	Homologous Superfamily
N [auth AC]	IPR003029	S1 domain	Domain
N [auth AC]	IPR013735	Transcription factor NusA, N-terminal	Domain
N [auth AC]	IPR059158	NusA, second KH domain, bacteria	Domain
N [auth AC]	IPR059258	Transcription factor NusA, bacteria	Family
N [auth AC]	IPR009019	K homology domain superfamily, prokaryotic type	Homologous Superfamily
N [auth AC]	IPR004087	K Homology domain	Domain
N [auth AC]	IPR010213	Transcription factor NusA	Domain
N [auth AC]	IPR015946	K homology domain-like, alpha/beta	Homologous Superfamily
N [auth AC]	IPR025249	Transcription factor NusA, first KH domain	Domain
N [auth AC]	IPR030842	Transcription factor NusA, prokaryotes	Family
N [auth AC]	IPR058582	NusA-like, second KH domain	Domain
N [auth AC]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
Q [auth AF]	IPR043425	NusG-like	Family
Q [auth AF]	IPR001062	Transcription antitermination protein, NusG	Family
Q [auth AF]	IPR036735	NusG, N-terminal domain superfamily	Homologous Superfamily
Q [auth AF]	IPR010216	Transcription antitermination protein, NusG, mycoplasma-related	Family
Q [auth AF]	IPR006645	NusG-like, N-terminal	Domain
Q [auth AF]	IPR047050	NusG, N-terminal	Domain
R [auth B]	IPR005704	Small ribosomal subunit protein uS3, bacteria	Family
R [auth B]	IPR001351	Small ribosomal subunit protein uS3, C-terminal	Domain
R [auth B]	IPR057258	Small ribosomal subunit protein uS3	Family
R [auth B]	IPR009019	K homology domain superfamily, prokaryotic type	Homologous Superfamily
R [auth B]	IPR004087	K Homology domain	Domain
R [auth B]	IPR004044	K Homology domain, type 2	Domain
R [auth B]	IPR015946	K homology domain-like, alpha/beta	Homologous Superfamily
R [auth B]	IPR036419	Ribosomal protein S3, C-terminal domain superfamily	Homologous Superfamily
R [auth B]	IPR018280	Small ribosomal subunit protein uS3, conserved site	Conserved Site
S [auth C]	IPR018079	Small ribosomal subunit protein uS4, conserved site	Conserved Site
S [auth C]	IPR002942	RNA-binding S4 domain	Domain
S [auth C]	IPR001912	Small ribosomal subunit protein uS4, N-terminal	Domain
S [auth C]	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
S [auth C]	IPR022801	Small ribosomal subunit protein uS4	Family
S [auth C]	IPR005709	Small ribosomal subunit protein uS4, bacteria	Family
T [auth D]	IPR005712	Small ribosomal subunit protein uS5, bacteria	Family
T [auth D]	IPR000851	Small ribosomal subunit protein uS5	Family
T [auth D]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
T [auth D]	IPR013810	Small ribosomal subunit protein uS5, N-terminal	Domain
T [auth D]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
T [auth D]	IPR018192	Small ribosomal subunit protein uS5, N-terminal, conserved site	Conserved Site
T [auth D]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
U [auth E]	IPR020815	Small ribosomal subunit protein bS6, conserved site	Conserved Site
U [auth E]	IPR000529	Small ribosomal subunit protein bS6	Family
U [auth E]	IPR020814	Small ribosomal subunit protein bS6, plastid/chloroplast	Family
U [auth E]	IPR035980	Small ribosomal subunit protein bS6 superfamily	Homologous Superfamily
U [auth E]	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
V [auth F]	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
V [auth F]	IPR000235	Small ribosomal subunit protein uS7	Family
V [auth F]	IPR005717	Small ribosomal subunit protein uS7, bacteria/organella	Family
V [auth F]	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
V [auth F]	IPR023798	Small ribosomal subunit protein uS7 domain	Domain
W [auth G]	IPR000630	Small ribosomal subunit protein uS8	Family
W [auth G]	IPR047863	Small ribosomal subunit protein uS8, conserved site	Conserved Site
W [auth G]	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
X [auth H]	IPR020574	Small ribosomal subunit protein uS9, conserved site	Conserved Site
X [auth H]	IPR023035	Small ribosomal subunit protein uS9, bacteria/plastid	Family
X [auth H]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
X [auth H]	IPR000754	Small ribosomal subunit protein uS9	Family
X [auth H]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
Y [auth I]	IPR001848	Small ribosomal subunit protein uS10	Family
Y [auth I]	IPR027486	Small ribosomal subunit protein uS10 domain	Domain
Y [auth I]	IPR036838	Small ribosomal subunit protein uS10 domain superfamily	Homologous Superfamily
Y [auth I]	IPR018268	Small ribosomal subunit protein uS10, conserved site	Conserved Site
AA [auth K]	IPR006032	Small ribosomal subunit protein uS12	Family
AA [auth K]	IPR005679	Ribosomal protein uS12, bacteria	Family
AA [auth K]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
BA [auth L]	IPR027437	Small ribosomal subunit protein uS13, C-terminal	Homologous Superfamily
BA [auth L]	IPR001892	Small ribosomal subunit protein uS13	Family
BA [auth L]	IPR018269	Small ribosomal subunit protein uS13, conserved site	Conserved Site
BA [auth L]	IPR010979	Small ribosomal subunit protein uS13-like, H2TH	Homologous Superfamily
BA [auth L]	IPR019980	Small ribosomal subunit protein uS13, bacteria	Family
CA [auth M]	IPR023053	Small ribosomal subunit protein uS14, bacteria	Family
CA [auth M]	IPR001209	Small ribosomal subunit protein uS14	Family
CA [auth M]	IPR018271	Small ribosomal subunit protein uS14, conserved site	Conserved Site
CA [auth M]	IPR043140	Small ribosomal subunit protein uS14 superfamily	Homologous Superfamily
DA [auth N]	IPR005290	Small ribosomal subunit protein uS15, bacteria	Family
DA [auth N]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
DA [auth N]	IPR000589	Small ribosomal subunit protein uS15	Family
EA [auth O]	IPR023803	Small ribosomal subunit protein bS16 domain superfamily	Homologous Superfamily
EA [auth O]	IPR000307	Small ribosomal subunit protein bS16	Family
FA [auth P]	IPR019984	Small ribosomal subunit protein uS17, bacteria/chloroplast	Family
FA [auth P]	IPR019979	Small ribosomal subunit protein uS17, conserved site	Conserved Site
FA [auth P]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
FA [auth P]	IPR000266	Small ribosomal subunit protein uS17	Family
GA [auth Q]	IPR001648	Small ribosomal subunit protein bS18	Family
GA [auth Q]	IPR018275	Small ribosomal subunit protein bS18, conserved site	Conserved Site
GA [auth Q]	IPR036870	Small ribosomal subunit protein bS18 superfamily	Homologous Superfamily
HA [auth R]	IPR005732	Small ribosomal subunit protein uS19, bacteria	Family
HA [auth R]	IPR002222	Small ribosomal subunit protein uS19	Family
HA [auth R]	IPR023575	Small ribosomal subunit protein uS19, superfamily	Homologous Superfamily
HA [auth R]	IPR020934	Small ribosomal subunit protein uS19, conserved site	Conserved Site
JA [auth T]	IPR001911	Small ribosomal subunit protein bS21	Family
KA [auth U]	IPR043141	Large ribosomal subunit protein uL10-like domain superfamily	Homologous Superfamily
KA [auth U]	IPR022973	Large ribosomal subunit protein uL10, bacteria	Family
KA [auth U]	IPR047865	Large ribosomal subunit protein uL10, bacteria/organella	Family
KA [auth U]	IPR002363	Large ribosomal subunit protein uL10, conserved site, bacteria	Conserved Site
KA [auth U]	IPR001790	Large ribosomal subunit protein uL10, N-terminal	Domain
LA [auth V], MA [auth W], NA [auth X], OA [auth Y]	IPR008932	Large ribosomal subunit protein bL12, oligomerization	Domain
LA [auth V], MA [auth W], NA [auth X], OA [auth Y]	IPR013823	Large ribosomal subunit protein bL12, C-terminal	Domain
LA [auth V], MA [auth W], NA [auth X], OA [auth Y]	IPR036235	Large ribosomal subunit protein bL12, oligomerization domain superfamily	Homologous Superfamily
LA [auth V], MA [auth W], NA [auth X], OA [auth Y]	IPR014719	Ribosomal protein bL12, C-terminal/adaptor protein ClpS-like	Homologous Superfamily
LA [auth V], MA [auth W], NA [auth X], OA [auth Y]	IPR000206	Large ribosomal subunit protein bL12	Family
PA [auth Z]	IPR007066	RNA polymerase Rpb1, domain 3	Domain
PA [auth Z]	IPR007081	RNA polymerase Rpb1, domain 5	Domain
PA [auth Z]	IPR045867	DNA-directed RNA polymerase, subunit beta-prime	Family
PA [auth Z]	IPR012754	DNA-directed RNA polymerase, subunit beta-prime, bacterial type	Family
PA [auth Z]	IPR042102	RNA polymerase Rpb1, domain 3 superfamily	Homologous Superfamily
PA [auth Z]	IPR007083	RNA polymerase Rpb1, domain 4	Domain
PA [auth Z]	IPR000722	RNA polymerase, alpha subunit	Domain
PA [auth Z]	IPR044893	RNA polymerase Rpb1, clamp domain superfamily	Homologous Superfamily
PA [auth Z]	IPR038120	RNA polymerase Rpb1, funnel domain superfamily	Homologous Superfamily
PA [auth Z]	IPR006592	RNA polymerase, N-terminal	Domain
PA [auth Z]	IPR007080	RNA polymerase Rpb1, domain 1	Domain
QA [auth a]	IPR005880	Large ribosomal subunit protein uL2, bacteria/organella	Family
QA [auth a]	IPR022669	Large ribosomal subunit protein uL2, C-terminal	Domain
QA [auth a]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
QA [auth a]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
QA [auth a]	IPR022671	Large ribosomal subunit protein uL2, conserved site	Conserved Site
QA [auth a]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
QA [auth a]	IPR022666	Large ribosomal subunit protein uL2, RNA-binding domain	Domain
QA [auth a]	IPR014726	Large ribosomal subunit protein uL2, domain 3	Homologous Superfamily
QA [auth a]	IPR002171	Large ribosomal subunit protein uL2	Family
RA [auth b]	IPR019926	Large ribosomal subunit protein uL3, conserved site	Conserved Site
RA [auth b]	IPR019927	Large ribosomal subunit protein uL3, bacteria/organella	Family
RA [auth b]	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
RA [auth b]	IPR000597	Large ribosomal subunit protein uL3	Family
SA [auth c]	IPR013005	Large ribosomal subunit protein uL4-like	Family
SA [auth c]	IPR002136	Large ribosomal subunit protein uL4	Family
SA [auth c]	IPR023574	Large ribosomal subunit protein uL4 domain superfamily	Homologous Superfamily
TA [auth d]	IPR020929	Large ribosomal subunit protein uL5, conserved site	Conserved Site
TA [auth d]	IPR022803	Large ribosomal subunit protein uL5 domain superfamily	Homologous Superfamily
TA [auth d]	IPR031309	Large ribosomal subunit protein uL5, C-terminal	Domain
TA [auth d]	IPR031310	Large ribosomal subunit protein uL5, N-terminal	Domain
TA [auth d]	IPR002132	Large ribosomal subunit protein uL5	Family
TA [auth d]	IPR020930	Large ribosomal subunit protein uL5, bacteria	Family
UA [auth e]	IPR020040	Large ribosomal subunit protein uL6, alpha-beta domain	Domain
UA [auth e]	IPR036789	Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily	Homologous Superfamily
UA [auth e]	IPR000702	Large ribosomal subunit protein uL6-like	Family
UA [auth e]	IPR019906	Large ribosomal subunit protein uL6, bacteria	Family
UA [auth e]	IPR002358	Large ribosomal subunit protein uL6, conserved site	Conserved Site
VA [auth f]	IPR009027	Large ribosomal subunit protein bL9/RNase H1, N-terminal	Homologous Superfamily
VA [auth f]	IPR020594	Large ribosomal subunit protein bL9, bacteria/chloroplast	Family
VA [auth f]	IPR036935	Large ribosomal subunit protein bL9, N-terminal domain superfamily	Homologous Superfamily
VA [auth f]	IPR036791	Large ribosomal subunit protein bL9, C-terminal domain superfamily	Homologous Superfamily
VA [auth f]	IPR020069	Large ribosomal subunit protein bL9, C-terminal	Domain
VA [auth f]	IPR020070	Large ribosomal subunit protein bL9, N-terminal	Domain
VA [auth f]	IPR000244	Large ribosomal subunit protein bL9	Family
WA [auth h]	IPR020785	Large ribosomal subunit protein uL11, conserved site	Conserved Site
WA [auth h]	IPR020783	Large ribosomal subunit protein uL11, C-terminal	Domain
WA [auth h]	IPR000911	Ribosomal protein uL11	Family
WA [auth h]	IPR036769	Large ribosomal subunit protein uL11, C-terminal domain superfamily	Homologous Superfamily
WA [auth h]	IPR020784	Large ribosomal subunit protein uL11, N-terminal	Domain
WA [auth h]	IPR036796	Large ribosomal subunit protein uL11, N-terminal domain superfamily	Homologous Superfamily
WA [auth h]	IPR006519	Large ribosomal subunit protein uL11, bacteria	Family
XA [auth i]	IPR023563	Large ribosomal subunit protein uL13, conserved site	Conserved Site
XA [auth i]	IPR005822	Large ribosomal subunit protein uL13	Family
XA [auth i]	IPR005823	Large ribosomal subunit protein uL13, bacteria	Family
XA [auth i]	IPR036899	Large ribosomal subunit protein uL13 superfamily	Homologous Superfamily
YA [auth j]	IPR036853	Large ribosomal subunit protein uL14 superfamily	Homologous Superfamily
YA [auth j]	IPR000218	Large ribosomal subunit protein uL14	Family
YA [auth j]	IPR019972	Large ribosomal subunit protein uL14, conserved site	Conserved Site
YA [auth j]	IPR005745	Large ribosomal subunit protein uL14, bacteria	Family
ZA [auth k]	IPR021131	Large ribosomal subunit protein uL15/eL18	Domain
ZA [auth k]	IPR030878	Large ribosomal subunit protein uL15	Family
ZA [auth k]	IPR036227	Large ribosomal subunit protein uL15/eL18 superfamily	Homologous Superfamily
ZA [auth k]	IPR063184	Ribosomal protein uL15, N-terminal region	Domain
ZA [auth k]	IPR005749	Large ribosomal subunit protein uL15, bacteria	Family
AB [auth l]	IPR000114	Large ribosomal subunit protein uL16, bacteria	Family
AB [auth l]	IPR036920	Large ribosomal subunit protein uL16 superfamily	Homologous Superfamily
AB [auth l]	IPR020798	Large ribosomal subunit protein uL16, conserved site	Conserved Site
AB [auth l]	IPR016180	Large ribosomal subunit protein uL16 domain	Domain
AB [auth l]	IPR047873	Large ribosomal subunit protein uL16	Family
BB [auth m]	IPR036373	Large ribosomal subunit protein bL17 superfamily	Homologous Superfamily
BB [auth m]	IPR047859	Large ribosomal subunit protein bL17, conserved site	Conserved Site
BB [auth m]	IPR000456	Large ribosomal subunit protein bL17	Family
CB [auth n]	IPR005484	Large ribosomal subunit protein uL18, bacterial/plantae/animalia	Family
CB [auth n]	IPR057268	Large ribosomal subunit protein uL18	Family
CB [auth n]	IPR004389	Large ribosomal subunit protein uL18, bacteria	Family
DB [auth o]	IPR001857	Large ribosomal subunit protein bL19	Family
DB [auth o]	IPR038657	Large ribosomal subunit protein bL19 superfamily	Homologous Superfamily
DB [auth o]	IPR018257	Large ribosomal subunit protein bL19, conserved site	Conserved Site
DB [auth o]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
EB [auth p]	IPR049946	Large ribosomal subunit protein bL20, conserved site	Conserved Site
EB [auth p]	IPR035566	Ribosomal protein bL20, C-terminal	Homologous Superfamily
EB [auth p]	IPR005813	Large ribosomal subunit protein bL20	Family
FB [auth q]	IPR028909	Large ribosomal subunit protein bL21-like	Family
FB [auth q]	IPR001787	Large ribosomal subunit protein bL21	Family
FB [auth q]	IPR036164	Large ribosomal subunit protein bL21-like superfamily	Homologous Superfamily
FB [auth q]	IPR018258	Large ribosomal subunit protein bL21, conserved site	Conserved Site
GB [auth r]	IPR018260	Large ribosomal subunit protein uL22, conserved site	Conserved Site
GB [auth r]	IPR036394	Ribosomal protein uL22 superfamily	Homologous Superfamily
GB [auth r]	IPR001063	Large ribosomal subunit protein uL22	Family
GB [auth r]	IPR005727	Large ribosomal subunit protein uL22, bacterial/chloroplast-type	Family
GB [auth r]	IPR047867	Large ribosomal subunit protein uL22, bacteria/organella	Family
HB [auth s]	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
HB [auth s]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
HB [auth s]	IPR013025	Large ribosomal subunit protein uL23-like	Family
IB [auth t]	IPR057264	Large ribosomal subunit protein uL24, C-terminal domain	Domain
IB [auth t]	IPR003256	Large ribosomal subunit protein uL24	Family
IB [auth t]	IPR041988	Large ribosomal subunit protein uL24, KOW domain	Domain
IB [auth t]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
IB [auth t]	IPR005824	KOW	Domain
IB [auth t]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
IB [auth t]	IPR005825	Large ribosomal subunit protein uL24, conserved site	Conserved Site
JB [auth u]	IPR001684	Large ribosomal subunit protein bL27	Family
JB [auth u]	IPR018261	Large ribosomal subunit protein bL27, conserved site	Conserved Site
KB [auth v]	IPR037147	Large ribosomal subunit protein bL28 superfamily	Homologous Superfamily
KB [auth v]	IPR050096	Bacterial ribosomal protein bL28	Family
KB [auth v]	IPR001383	Large ribosomal subunit protein bL28, bacteria	Family
KB [auth v]	IPR026569	Large ribosomal subunit protein bL28	Family
KB [auth v]	IPR034704	Large ribosomal subunit protein bL28/bL31-like superfamily	Homologous Superfamily
LB [auth w]	IPR050063	Universal ribosomal protein uL29	Family
LB [auth w]	IPR001854	Large ribosomal subunit protein uL29	Family
LB [auth w]	IPR036049	Large ribosomal subunit protein uL29 superfamily	Homologous Superfamily
LB [auth w]	IPR018254	Large ribosomal subunit protein uL29, conserved site	Conserved Site
MB [auth x]	IPR002150	Large ribosomal subunit protein bL31 type A/B	Family
MB [auth x]	IPR027491	Large ribosomal subunit protein bL31 type A	Family
MB [auth x]	IPR042105	Large ribosomal subunit protein bL31 superfamily	Homologous Superfamily
MB [auth x]	IPR034704	Large ribosomal subunit protein bL28/bL31-like superfamily	Homologous Superfamily
NB [auth y]	IPR002677	Large ribosomal subunit protein bL32	Family
NB [auth y]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
NB [auth y]	IPR044957	Large ribosomal subunit protein bL32, bacteria	Family
OB [auth z]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
OB [auth z]	IPR038584	Large ribosomal subunit protein bL33 superfamily	Homologous Superfamily
OB [auth z]	IPR001705	Large ribosomal subunit protein bL33	Family
OB [auth z]	IPR018264	Large ribosomal subunit protein bL33, conserved site	Conserved Site
IA [auth S]	IPR036510	Small ribosomal subunit protein bS20 superfamily	Homologous Superfamily
IA [auth S]	IPR002583	Small ribosomal subunit protein bS20	Family
Z [auth J]	IPR001971	Small ribosomal subunit protein uS11	Family
Z [auth J]	IPR036967	Small ribosomal subunit protein uS11 superfamily	Homologous Superfamily
Z [auth J]	IPR019981	Small ribosomal subunit protein uS11, bacteria	Family
Z [auth J]	IPR018102	Small ribosomal subunit protein uS11, conserved site	Conserved Site
B [auth 1]	IPR021137	Large ribosomal subunit protein bL35-like	Family
B [auth 1]	IPR018265	Large ribosomal subunit protein bL35, conserved site	Conserved Site
B [auth 1]	IPR001706	Large ribosomal subunit protein bL35	Family
B [auth 1]	IPR037229	Large ribosomal subunit protein bL35 superfamily	Homologous Superfamily
J [auth 9]	IPR015712	DNA-directed RNA polymerase, subunit 2	Family
J [auth 9]	IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Homologous Superfamily
J [auth 9]	IPR042107	DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily	Homologous Superfamily
J [auth 9]	IPR037034	RNA polymerase Rpb2, domain 2 superfamily	Homologous Superfamily
J [auth 9]	IPR007120	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	Domain
J [auth 9]	IPR007121	RNA polymerase, beta subunit, conserved site	Conserved Site
J [auth 9]	IPR007645	RNA polymerase Rpb2, domain 3	Domain
J [auth 9]	IPR014724	RNA polymerase Rpb2, OB-fold	Homologous Superfamily
J [auth 9]	IPR019462	DNA-directed RNA polymerase, beta subunit, external 1 domain	Domain
J [auth 9]	IPR010243	DNA-directed RNA polymerase beta subunit, bacterial-type	Family
J [auth 9]	IPR007644	RNA polymerase, beta subunit, protrusion	Domain
J [auth 9]	IPR007641	RNA polymerase Rpb2, domain 7	Domain