1A2C | pdb_00001a2c

Structure of thrombin inhibited by AERUGINOSIN298-A from a BLUE-GREEN ALGA

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1HGT	PDB ENTRY 1HGT

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		7.3		pH 7.3

Crystal Properties
Matthews coefficient	Solvent content
2.61	52.89

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 71.97	α = 90
b = 72.48	β = 100.93
c = 72.24	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	287	IMAGE PLATE	RIGAKU	NO MIRRORS	1995-03-07	M

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU RUH2R

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.1	15	70	0.082	8	3.3		15999		2	29.6

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.1	2.25	47		0.18	2.4	2.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Starting model	Resolution (High)	Resolution (Low)	Cut-off Sigma (F)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Work (Depositor)	R-Free (Depositor)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	PDB ENTRY 1HGT	2.1	7	2	15999		70	0.15		31.5

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
p_transverse_tor	31.9
p_staggered_tor	24
p_scangle_it	3.8
p_planar_tor	3.1
p_scbond_it	2.66
p_mcangle_it	2.14
p_mcbond_it	1.3
p_multtor_nbd	0.345
p_xyhbond_nbd	0.323
p_singtor_nbd	0.25
p_chiral_restr	0.197
p_planar_d	0.06
p_angle_d	0.04
p_plane_restr	0.036
p_bond_d	0.018
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2452
Nucleic Acid Atoms
Solvent Atoms	176
Heterogen Atoms	1

Software

Software
Software Name	Purpose
RIGAKU	data collection
RIGAKU	data reduction
X-PLOR	model building
PROLSQ	refinement
X-PLOR	refinement
RIGAKU	data scaling
X-PLOR	phasing