1B32 | pdb_00001b32

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KMK

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1OLB	PDB ENTRY 1OLB

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		5.5		CO-CRYSTALLIZED WITH URANIUM ACETATE, PH 5.5

Crystal Properties
Matthews coefficient	Solvent content
2.46	45

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 109.72	α = 90
b = 75.72	β = 90
c = 70.31	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	120	IMAGE PLATE	MARRESEARCH			M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	EMBL/DESY, HAMBURG BEAMLINE X11		EMBL/DESY, HAMBURG	X11

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.75	44.2	96.69	0.059		3.3		60799			14.2

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.75	1.78	99.2		0.203	4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Work (Depositor)	R-Free (Depositor)	Mean Isotropic B
X-RAY DIFFRACTION	OTHER	THROUGHOUT	PDB ENTRY 1OLB	1.75	15	59647	2948	98.6	0.1816	0.214	17.7

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
p_transverse_tor	29.4
p_staggered_tor	14.3
p_planar_tor	3.5
p_scangle_it	2.31
p_mcangle_it	1.703
p_scbond_it	1.554
p_mcbond_it	1.187
p_multtor_nbd	0.248
p_singtor_nbd	0.176
p_xyhbond_nbd	0.127
p_planar_d	0.029
p_angle_d	0.027
p_bond_d	0.01
p_angle_deg
p_hb_or_metal_coord
p_plane_restr
p_chiral_restr
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4219
Nucleic Acid Atoms
Solvent Atoms	437
Heterogen Atoms	36

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
CCP4	model building
REFMAC	refinement
CCP4	phasing