1I94 | pdb_00001i94

CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITH TETRACYCLINE, EDEINE AND IF3

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7.8	291	MPD, magnesium chloride, spermidine, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 291.K

Crystal Properties
Matthews coefficient	Solvent content
4.59	73.18

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 406.3	α = 90
b = 406.3	β = 90
c = 173.1	γ = 90

Symmetry
Space Group	P 41 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	85	CCD	SBC		2000-12-01	M	SINGLE WAVELENGTH
2	1	x-ray	85	CCD	ADSC QUANTUM 4		2000-06-01	M	SINGLE WAVELENGTH
3	1	x-ray	85	IMAGE PLATE	MARRESEARCH		2000-07-01	M	SINGLE WAVELENGTH
4	1	x-ray	85	IMAGE PLATE	MARRESEARCH		2000-04-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 19-ID	1.2096	APS	19-ID
2	SYNCHROTRON	ESRF BEAMLINE ID14-2	0.9330	ESRF	ID14-2
3	SYNCHROTRON	MPG/DESY, HAMBURG BEAMLINE BW6	1.2130	MPG/DESY, HAMBURG	BW6
4	SYNCHROTRON	EMBL/DESY, HAMBURG BEAMLINE BW7B	0.8424	EMBL/DESY, HAMBURG	BW7B

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1,2,3,4	3.2	35	86.8	0.014	19.8	11	228166	221133	2	1

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	3.2	3.26	83.2		0.381	0.381	2	7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Free (Depositor)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MIR	3.2	35	228166	228166	22815		0.207	0.207	0.203	0.245	RANDOM

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	11859
Nucleic Acid Atoms	32534
Solvent Atoms
Heterogen Atoms	1225

Software

Software
Software Name	Purpose
SHARP	phasing
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.