Solution NMR structure of Phage-like element PBSX protein xkdW, Northeast Structural Genomics Consortium Target SR355
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | SIMULTANEOUS HETERONUCLEAR RESOLVED [1H,1H]-NOESY | 0.02% NaN3, 100mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5, 95% H2O, 5% D2O | 95% H2O/5% D2O | n.a. | 6.5 | ambient | 298 | |
| 2 | GFT (4,3)D HNNCABCA | 0.02% NaN3, 100mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5, 95% H2O, 5% D2O | 95% H2O/5% D2O | n.a. | 6.5 | ambient | 298 | |
| 3 | GFT (4,3)D CABCA(CO)NHN | 0.02% NaN3, 100mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5, 95% H2O, 5% D2O | 95% H2O/5% D2O | n.a. | 6.5 | ambient | 298 | |
| 4 | GFT (4,3)D HABCAB(CO)NHN | 0.02% NaN3, 100mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5, 95% H2O, 5% D2O | 95% H2O/5% D2O | n.a. | 6.5 | ambient | 298 | |
| 5 | GFT (4,3)D HCCH | 0.02% NaN3, 100mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5, 95% H2O, 5% D2O | 95% H2O/5% D2O | n.a. | 6.5 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 750 |
| 2 | Varian | INOVA | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing molecular dynamics torsion angle dynamics | VNMR | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (fewest violations) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | VNMR | 6.1c | Varian |
| 2 | processing | NMRPipe | 2.3 | Delaglio, F |
| 3 | data analysis | AutoAssign | 1.15.1 | Moseley, H. |
| 4 | data analysis | AutoStructure | 2.0 | HUANG, Y.J. |
| 5 | structure solution | CYANA | 21 | GUNTERT |
| 6 | refinement | CNS | 1.1 | Brunger, A.T. |














