2RKM | pdb_00002rkm

STRUCTURE OF OPPA COMPLEXED WITH LYS-LYS

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		5.5		7% PEG 4K, 50MM SODIUM ACETATE PH5.5, 1MM URANYL ACETATE AND 30MG/ML OPPA

Crystal Properties
Matthews coefficient	Solvent content
2.58	52.2

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 110.47	α = 90
b = 77.15	β = 90
c = 71.59	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	120	IMAGE PLATE	MARRESEARCH		1996-08-04	M

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SRS BEAMLINE PX9.5		SRS	PX9.5

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.8	20	92.9	0.072	7.6	6.6		57099

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.8	1.89	92.9		0.219	3.4	5.8

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Work (Depositor)	R-Free (Depositor)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION		FREE R	1.8	20	57099			0.167	0.219	COPIED FROM 1JET	16.7

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
p_transverse_tor	30.5
p_staggered_tor	16
p_planar_tor	3.5
p_scangle_it	2.984
p_mcangle_it	2.046
p_scbond_it	2.017
p_mcbond_it	1.505
p_multtor_nbd	0.242
p_singtor_nbd	0.172
p_xyhbond_nbd	0.169
p_chiral_restr	0.083
p_planar_d	0.024
p_angle_d	0.022
p_bond_d	0.006
p_angle_deg
p_hb_or_metal_coord
p_plane_restr
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4189
Nucleic Acid Atoms
Solvent Atoms	519
Heterogen Atoms	42

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALA	data scaling
CCP4	data reduction
REFMAC	refinement
CCP4	data scaling