Experiment: 3F51

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	4.6	298	0.1 M sodium chloride, 23% 2-methyl-2,4-pentanediol, 15% glycerol, 0.085 M sodium acetate , pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
2	VAPOR DIFFUSION, SITTING DROP	4.6	298	0.0085 M cobalt chloride, 0.85 M 1,6-hexanediol, 15% glycerol, 0.085 M sodium acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 65.44	α = 90
b = 84.82	β = 95.87
c = 71.43	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	PHILLIPS		2007-11-09	M	SINGLE WAVELENGTH
2	1	x-ray	100	M	MAD

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06SA	1.000	SLS	X06SA
2	SYNCHROTRON	SLS BEAMLINE X06SA	0.9790,0.9793,0.9717	SLS	X06SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1,2	2.05	46	99.7	0.052	16	3.7	48793	48625	1.7	3

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	2.05	2.15	99.8		0.699	2.8	3.7	6411

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Cut-off Sigma (I)	Cut-off Sigma (F)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MAD	THROUGHOUT	2.05	45.74	3	1.7	46193	46193	2432	100	0.21359	0.21234	0.26	0.23801	0.27	RANDOM	46.438

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.03		-1.89	-0.44		0.02

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.557
r_dihedral_angle_4_deg	21.781
r_dihedral_angle_3_deg	16.856
r_scangle_it	5.028
r_dihedral_angle_1_deg	4.599
r_scbond_it	3.13
r_mcangle_it	1.658
r_angle_refined_deg	1.465
r_mcbond_it	1.044
r_nbtor_refined	0.301

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.557
r_dihedral_angle_4_deg	21.781
r_dihedral_angle_3_deg	16.856
r_scangle_it	5.028
r_dihedral_angle_1_deg	4.599
r_scbond_it	3.13
r_mcangle_it	1.658
r_angle_refined_deg	1.465
r_mcbond_it	1.044
r_nbtor_refined	0.301
r_symmetry_vdw_refined	0.231
r_nbd_refined	0.221
r_xyhbond_nbd_refined	0.157
r_symmetry_hbond_refined	0.151
r_chiral_restr	0.095
r_bond_refined_d	0.015
r_gen_planes_refined	0.005

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4073
Nucleic Acid Atoms
Solvent Atoms	212
Heterogen Atoms	4

Software

Software
Software Name	Purpose
RemDAq	data collection
SHARP	phasing
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.