Experiment: 6II1

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6IHX

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	COUNTER-DIFFUSION	6.8	293	25% PEG3,350 0.2 M MgCl2 0.2 M KCl 0.2 M NaCl 0.1 M HEPES pH6.8

Crystal Properties
Matthews coefficient	Solvent content
2.18	43.51

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 63.56	α = 90
b = 76.283	β = 90
c = 109.789	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 270		2017-11-21	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PHOTON FACTORY BEAMLINE AR-NW12A	1.0000	Photon Factory	AR-NW12A

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.34	48.83	99.8	0.076	0.079	0.021	0.999	20.3	14.5		120044

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.34	1.36	99.6		1.517	1.572	0.409	0.694		14.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	6IHX	1.34	48.83	117962	1998	99.8	0.138	0.1374	0.15	0.1753	0.18	RANDOM	20.994

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.71			1.24		-0.52

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	34.501
r_dihedral_angle_2_deg	34.09
r_dihedral_angle_4_deg	16.541
r_sphericity_bonded	14.908
r_dihedral_angle_3_deg	11.438
r_dihedral_angle_1_deg	5.11
r_rigid_bond_restr	2.312
r_angle_refined_deg	1.465
r_angle_other_deg	1.164
r_chiral_restr	0.085

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	34.501
r_dihedral_angle_2_deg	34.09
r_dihedral_angle_4_deg	16.541
r_sphericity_bonded	14.908
r_dihedral_angle_3_deg	11.438
r_dihedral_angle_1_deg	5.11
r_rigid_bond_restr	2.312
r_angle_refined_deg	1.465
r_angle_other_deg	1.164
r_chiral_restr	0.085
r_bond_refined_d	0.01
r_gen_planes_refined	0.009
r_gen_planes_other	0.009
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4294
Nucleic Acid Atoms
Solvent Atoms	723
Heterogen Atoms	180

Software

Software
Software Name	Purpose
XDS	data reduction
Aimless	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.