7OHO | pdb_00007oho

Crystal structure of AP2 FCHO2 chimera

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.2	289	18% PEG 12000 0.1M Na/K phosphate pH 6.2 0.2M NaCl 4mM DTT in the presence of 3-fold molar excess of IP6.

Crystal Properties
Matthews coefficient	Solvent content
2.69	54.22

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 122.04	α = 90
b = 122.04	β = 90
c = 257.41	γ = 120

Symmetry
Space Group	P 31 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M-F		2015-11-09	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I02	0.900	Diamond	I02

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.88	66.61	99.9	0.104	0.115	0.037	0.998	13.5	9.8		51118			79.944

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.88	2.95	99.9		1.803	2.019	0.649	0.529	1.2	9.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	Phaser	2.88	61.095	51053	2547	99.978	0.187	0.1819	0.19	0.2734	0.27	96.59

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.539	0.269		0.539		-1.747

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	38.397
r_dihedral_angle_3_deg	20.251
r_dihedral_angle_4_deg	19.128
r_lrange_it	16.976
r_lrange_other	16.976
r_mcangle_it	13.16
r_mcangle_other	13.16
r_scangle_it	12.86
r_scangle_other	12.859
r_mcbond_it	9.079
r_mcbond_other	9.079
r_scbond_it	8.676
r_scbond_other	8.675
r_dihedral_angle_1_deg	7.769
r_angle_refined_deg	1.606
r_angle_other_deg	1.183
r_symmetry_nbd_refined	0.276
r_nbd_other	0.257
r_nbd_refined	0.224
r_symmetry_xyhbond_nbd_refined	0.214
r_symmetry_nbd_other	0.194
r_xyhbond_nbd_refined	0.186
r_nbtor_refined	0.167
r_symmetry_xyhbond_nbd_other	0.081
r_symmetry_nbtor_other	0.078
r_chiral_restr	0.065
r_bond_refined_d	0.008
r_gen_planes_refined	0.006
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	13621
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms	60

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing