7PI4 | pdb_00007pi4

FAK Protac GSK215 in complex with FAK and pVHL:ElonginC:ElonginB

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3PSK

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION		293	0.05M CaCl, 0.1M MES pH 6.5, 45%v/v, PEG200

Crystal Properties
Matthews coefficient	Solvent content
2.87	57.1

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 59.55	α = 90
b = 77.26	β = 90
c = 175.18	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 X 16M		2018-06-11	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRF BEAMLINE BL17U1	0.97918	SSRF	BL17U1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.24	58.39	99.9	0.198	0.984	6.2	6.7		39778

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.24	2.3	99.9		0.978	0.779	2.2	6.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3PSK	2.24	56.381	39716	1963	99.882	0.198	0.1953	0.2	0.2512	0.25	53.214

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.015			0.763		-0.748

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.389
r_dihedral_angle_4_deg	20.415
r_dihedral_angle_3_deg	15.961
r_lrange_other	12.057
r_lrange_it	12.049
r_scangle_it	10.181
r_scangle_other	10.179
r_mcangle_it	8.133
r_mcangle_other	8.133
r_scbond_it	7.079
r_dihedral_angle_1_deg	7.078
r_scbond_other	7.077
r_mcbond_it	5.86
r_mcbond_other	5.859
r_angle_refined_deg	1.431
r_angle_other_deg	1.194
r_nbd_refined	0.194
r_nbd_other	0.194
r_symmetry_nbd_other	0.186
r_symmetry_nbd_refined	0.174
r_xyhbond_nbd_refined	0.167
r_nbtor_refined	0.164
r_metal_ion_refined	0.128
r_symmetry_xyhbond_nbd_other	0.125
r_symmetry_xyhbond_nbd_refined	0.119
r_symmetry_nbtor_other	0.086
r_chiral_restr	0.062
r_bond_refined_d	0.007
r_gen_planes_refined	0.006
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4929
Nucleic Acid Atoms
Solvent Atoms	150
Heterogen Atoms	155

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
Aimless	data scaling