8CKS | pdb_00008cks

Crystal structure of Human Serum Albumin in complex with FESAN

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2XVV

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		281	1.4 M (NH4)2SO4, 1% v/v 1,1,1,3,3,3-hexafluoro-2-propanol

Crystal Properties
Matthews coefficient	Solvent content
2.54	51.6

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 94.668	α = 90
b = 57.817	β = 109.225
c = 129.361	γ = 90

Symmetry
Space Group	I 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	RIGAKU HyPix-6000HE		2022-05-30	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SEALED TUBE	RIGAKU PhotonJet-S	1.54184

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.6	19.571	99.6	0.102	0.108	0.035	0.998	13.6	9.7		20485			48

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.6	2.72	100		0.793	0.835	0.26	0.933	2.6	10.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.6	19.571	19889	994	96.6	0.238	0.2344	0.24	0.3139	0.32	71.525

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
2.167		3.367	-6.392		1.509

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	19.56
r_dihedral_angle_6_deg	12.85
r_dihedral_angle_2_deg	12.631
r_lrange_it	11.296
r_lrange_other	11.295
r_scangle_it	8.369
r_scangle_other	8.33
r_mcangle_it	7.611
r_mcangle_other	7.61
r_dihedral_angle_1_deg	6.179
r_scbond_it	5.302
r_scbond_other	5.196
r_mcbond_it	5.068
r_mcbond_other	5.068
r_angle_refined_deg	1.133
r_angle_other_deg	0.4
r_xyhbond_nbd_refined	0.319
r_nbd_refined	0.24
r_nbd_other	0.227
r_symmetry_nbd_other	0.219
r_symmetry_xyhbond_nbd_refined	0.219
r_nbtor_refined	0.186
r_symmetry_nbd_refined	0.179
r_symmetry_nbtor_other	0.075
r_symmetry_xyhbond_nbd_other	0.062
r_chiral_restr	0.055
r_gen_planes_refined	0.005
r_bond_refined_d	0.004
r_bond_other_d	0.003
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4652
Nucleic Acid Atoms
Solvent Atoms	142
Heterogen Atoms	135

Software

Software
Software Name	Purpose
REFMAC	refinement
CrysalisPro	data reduction
Aimless	data scaling
MOLREP	phasing