Experiment: 8OW7

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	8OQK

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8.5	277	1.5 M ammonium sulfate, 0.1 M Tris pH 8.5, 12% (v/v) glycerol
2	VAPOR DIFFUSION, SITTING DROP	8.5	277	1.5 M ammonium sulfate, 0.1 M Tris pH 8.5, 12% (v/v) glycerol

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 143.75	α = 90
b = 143.75	β = 90
c = 210.95	γ = 120

Symmetry
Space Group	P 31 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M-F		2022-02-05	M	SINGLE WAVELENGTH
2	2	x-ray	100	PIXEL	DECTRIS PILATUS 2M-F		2022-02-05	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	1.0	SLS	X06DA
2	SYNCHROTRON	SLS BEAMLINE X06DA	1.0	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3.06	48.585	100	0.99	7.97	20.38		48712			74.28

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	3.06	3.23			0.363

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3.06	29.85	48103	1444	99.855	0.22	0.2192	0.22	0.2454	0.25	86.954

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.006	0.003		0.006		-0.02

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	11.074
r_dihedral_angle_6_deg	8.848
r_dihedral_angle_2_deg	5.955
r_lrange_it	5.521
r_dihedral_angle_1_deg	4.601
r_scangle_it	2.076
r_mcangle_it	2.06
r_scbond_it	1.267
r_mcbond_it	1.197
r_angle_refined_deg	0.609

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	11.074
r_dihedral_angle_6_deg	8.848
r_dihedral_angle_2_deg	5.955
r_lrange_it	5.521
r_dihedral_angle_1_deg	4.601
r_scangle_it	2.076
r_mcangle_it	2.06
r_scbond_it	1.267
r_mcbond_it	1.197
r_angle_refined_deg	0.609
r_nbtor_refined	0.305
r_nbd_refined	0.161
r_symmetry_nbd_refined	0.138
r_xyhbond_nbd_refined	0.077
r_symmetry_xyhbond_nbd_refined	0.055
r_chiral_restr	0.046
r_bond_refined_d	0.002
r_gen_planes_refined	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	13091
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms	185

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
MOLREP	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.