NMR2 Structure of KRAS G12V (GMPPNP bound) in complex with 1-(5-methoxy-1H-indol-3-yl)-N,N-dimethylmethanamine
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H NOESY | 1 mM KRAS G12V GMPPNP, 5 mM 1-(5-methoxy-1H-indol-3-yl)-N,N-dimethylmethanamine | 100% D2O | 130 mM | 7.4 | 1 atm | 298 | Bruker AVANCE III 700 |
| 2 | 2D 1H-13C HSQC | 1 mM KRAS G12V GMPPNP, 5 mM 1-(5-methoxy-1H-indol-3-yl)-N,N-dimethylmethanamine | 100% D2O | 130 mM | 7.4 | 1 atm | 298 | Bruker AVANCE III 700 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE III | 700 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | HADDOCK | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 4 |
| Conformers Submitted Total Number | 4 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | HADDOCK | Bonvin | |
| 2 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 3 | chemical shift assignment | CcpNmr Analysis | CCPN | |
| 4 | peak picking | CcpNmr Analysis | CCPN | |
