8XOX | pdb_00008xox

The Crystal Structure of FAK2 from Biortus.

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5TO8

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	0.2M LiCl2, 0.1M Tris pH8.0, 20% PEG 6000

Crystal Properties
Matthews coefficient	Solvent content
2.33	47.15

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 37.797	α = 90
b = 59.132	β = 95.033
c = 67.295	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2023-09-16	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	AUSTRALIAN SYNCHROTRON BEAMLINE MX2	0.953732	Australian Synchrotron	MX2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.9	44.384	99.8	0.084	13.7	6.9		23394

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.9	1.94			0.701

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.9	44.384	23378	1141	99.782	0.172	0.1693	0.18	0.2298	0.25	28.469

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.822		-1.269	1.868		0.175

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	29.993
r_dihedral_angle_3_deg	14.911
r_dihedral_angle_6_deg	14.879
r_dihedral_angle_other_2_deg	12.534
r_lrange_it	7.719
r_lrange_other	7.7
r_scangle_it	6.441
r_scangle_other	6.439
r_dihedral_angle_1_deg	5.777
r_scbond_it	4.045
r_scbond_other	4.044
r_mcangle_other	3.636
r_mcangle_it	3.634
r_mcbond_it	2.68
r_mcbond_other	2.674
r_angle_refined_deg	1.398
r_angle_other_deg	0.48
r_symmetry_nbd_refined	0.272
r_nbd_refined	0.214
r_nbd_other	0.198
r_nbtor_refined	0.186
r_symmetry_nbd_other	0.183
r_xyhbond_nbd_refined	0.166
r_symmetry_xyhbond_nbd_refined	0.163
r_symmetry_nbtor_other	0.077
r_chiral_restr	0.068
r_bond_refined_d	0.007
r_gen_planes_refined	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2115
Nucleic Acid Atoms
Solvent Atoms	207
Heterogen Atoms	47

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing