9F27 | pdb_00009f27

Solution structure of the Pyrococcus abyssi Rpa2 winged-helix domain

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	300 uM [U-98% 13C; U-98% 15N] RPA2WH, 20 mM MES, 150 mM NaCl	95% H2O/5% D2O	170 mM	6	1 atm	308.15	Bruker AVANCE NEO 800
2	2D 1H-13C HSQC	300 uM [U-98% 13C; U-98% 15N] RPA2WH, 20 mM MES, 150 mM NaCl	95% H2O/5% D2O	170 mM	6	1 atm	308.15	Bruker AVANCE NEO 800
3	3D HNCACB	300 uM [U-98% 13C; U-98% 15N] RPA2WH, 20 mM MES, 150 mM NaCl	95% H2O/5% D2O	170 mM	6	1 atm	308.15	Bruker AVANCE NEO 800
4	3D HNCA	300 uM [U-98% 13C; U-98% 15N] RPA2WH, 20 mM MES, 150 mM NaCl	95% H2O/5% D2O	170 mM	6	1 atm	308.15	Bruker AVANCE NEO 800
5	3D HNCO	300 uM [U-98% 13C; U-98% 15N] RPA2WH, 20 mM MES, 150 mM NaCl	95% H2O/5% D2O	170 mM	6	1 atm	308.15	Bruker AVANCE NEO 800
8	3D HN(CO)CA	300 uM [U-98% 13C; U-98% 15N] RPA2WH, 20 mM MES, 150 mM NaCl	95% H2O/5% D2O	170 mM	6	1 atm	308.15	Bruker AVANCE NEO 800
7	3D C(CO)NH	300 uM [U-98% 13C; U-98% 15N] RPA2WH, 20 mM MES, 150 mM NaCl	95% H2O/5% D2O	170 mM	6	1 atm	308.15	Bruker AVANCE NEO 800
6	3D H(CCO)NH	300 uM [U-98% 13C; U-98% 15N] RPA2WH, 20 mM MES, 150 mM NaCl	95% H2O/5% D2O	170 mM	6	1 atm	308.15	Bruker AVANCE NEO 800
10	3D HCCH-TOCSY	300 uM [U-98% 13C; U-98% 15N] RPA2WH, 20 mM MES, 150 mM NaCl	95% H2O/5% D2O	170 mM	6	1 atm	308.15	Bruker AVANCE NEO 800
9	3D HBHA(CO)NH	300 uM [U-98% 13C; U-98% 15N] RPA2WH, 20 mM MES, 150 mM NaCl	95% H2O/5% D2O	170 mM	6	1 atm	308.15	Bruker AVANCE NEO 800
11	3D HBHAN	300 uM [U-98% 13C; U-98% 15N] RPA2WH, 20 mM MES, 150 mM NaCl	95% H2O/5% D2O	170 mM	6	1 atm	308.15	Bruker AVANCE NEO 800
14	3D 1H-15N NOESY	300 uM [U-98% 13C; U-98% 15N] RPA2WH, 20 mM MES, 150 mM NaCl	95% H2O/5% D2O	170 mM	6	1 atm	308.15	Bruker AVANCE NEO 800
13	3D 1H-13C NOESY aliphatic	300 uM [U-98% 13C; U-98% 15N] RPA2WH, 20 mM MES, 150 mM NaCl	95% H2O/5% D2O	170 mM	6	1 atm	308.15	Bruker AVANCE NEO 800
15	3D 1H-15N TOCSY	300 uM [U-98% 13C; U-98% 15N] RPA2WH, 20 mM MES, 150 mM NaCl	95% H2O/5% D2O	170 mM	6	1 atm	308.15	Bruker AVANCE NEO 800
16	2D CB(CGCD)HD	300 uM [U-98% 13C; U-98% 15N] RPA2WH, 20 mM MES, 150 mM NaCl	95% H2O/5% D2O	170 mM	6	1 atm	308.15	Bruker AVANCE NEO 800
17	2D CB(CGCDCE)HE	300 uM [U-98% 13C; U-98% 15N] RPA2WH, 20 mM MES, 150 mM NaCl	95% H2O/5% D2O	170 mM	6	1 atm	308.15	Bruker AVANCE NEO 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE NEO	800

NMR Refinement
Method	Details	Software
torsion angle dynamics	Structures are calculated using a log-harmonic potential with a total of 1106 restraints: 954 distances, 32 hydrogen bonds and 120 backbone dihedral angles	CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	200
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
5	collection	TopSpin	4.1.3	Bruker Biospin
6	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
1	chemical shift assignment	CcpNmr Analysis	2.5.2	CCPN
7	peak picking	CcpNmr Analysis		CCPN
2	structure calculation	CNS	1.2.1	Brunger, Adams, Clore, Gros, Nilges and Read
8	chemical shift calculation	ARIA	2.3.2	Linge, O'Donoghue and Nilges
3	refinement	CNS	1.2.1	Brunger, Adams, Clore, Gros, Nilges and Read