9FZR | pdb_00009fzr

Wild-type EGFR in covalent complex with Poziotinib analogue

X-RAY DIFFRACTION

---

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2ITZ

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8	293	25mM TRIS-HCL pH8.0, 150mM NaCl, 5% Glycerol, 1mM TCEP, 100mM HEPES pH 7.4, 40% PEG400

Crystal Properties
Matthews coefficient	Solvent content
3.45	64.34

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 145.823	α = 90
b = 145.823	β = 90
c = 145.823	γ = 90

Symmetry
Space Group	I 2 3

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2021-02-12	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.898423	Diamond	I03

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.99	59.603	100	0.101	1	24	41		35412

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.99	2.04	100		5.43	0.396

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.991	59.603	35411	1773	99.992	0.189	0.1863	0.1864	0.2332	0.2333	66.126

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_other_2_deg	31.94
r_dihedral_angle_6_deg	15.308
r_lrange_it	14.266
r_lrange_other	14.265
r_dihedral_angle_3_deg	14.234
r_dihedral_angle_2_deg	12.921
r_scangle_it	10.052
r_scangle_other	10.049
r_mcangle_it	9.318
r_mcangle_other	9.315
r_dihedral_angle_1_deg	7.179
r_scbond_it	6.771
r_scbond_other	6.769
r_mcbond_it	6.456
r_mcbond_other	6.456
r_angle_refined_deg	1.723
r_angle_other_deg	0.586
r_xyhbond_nbd_refined	0.286
r_symmetry_xyhbond_nbd_refined	0.255
r_nbd_refined	0.229
r_symmetry_nbd_other	0.197
r_nbtor_refined	0.185
r_nbd_other	0.18
r_symmetry_nbd_refined	0.174
r_chiral_restr	0.087
r_symmetry_nbtor_other	0.082
r_bond_refined_d	0.008
r_gen_planes_refined	0.008
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2593
Nucleic Acid Atoms
Solvent Atoms	215
Heterogen Atoms	31

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
pointless	data scaling
PHASER	phasing