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EGFR 20ins complexed with Furmonertinib
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7LGS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 18% PEG4000, 0.1 M Sodium cacodylate 6.5, 0.2 M Magnesium chloride
Crystal Properties Matthews coefficient Solvent content 2.12 42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.3 α = 73.4 b = 70.655 β = 85.04 c = 73.475 γ = 72.45
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 9M 2023-10-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL02U1 0.97918 SSRF BL02U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.33 70.41 98.5 0.07 0.989 8.6 3.4 52081
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.33 2.39 0.806 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.33 70.41 49603 2459 98.51 0.24322 0.24142 0.2422 0.27967 0.2762 RANDOM 56.931
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.63 -0.99 4.67 -0.35 -2.08 -1.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.84 r_dihedral_angle_4_deg 16.512 r_dihedral_angle_3_deg 14.866 r_long_range_B_refined 8.348 r_long_range_B_other 8.347 r_dihedral_angle_1_deg 5.741 r_mcangle_it 3.748 r_mcangle_other 3.748 r_scangle_other 3.177 r_mcbond_other 2.128
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.84 r_dihedral_angle_4_deg 16.512 r_dihedral_angle_3_deg 14.866 r_long_range_B_refined 8.348 r_long_range_B_other 8.347 r_dihedral_angle_1_deg 5.741 r_mcangle_it 3.748 r_mcangle_other 3.748 r_scangle_other 3.177 r_mcbond_other 2.128 r_mcbond_it 2.127 r_scbond_it 1.785 r_scbond_other 1.784 r_angle_refined_deg 1.175 r_angle_other_deg 1.063 r_chiral_restr 0.045 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8982 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms 164
Software Software Software Name Purpose REFMAC refinement DIALS data scaling PHASER phasing PDB_EXTRACT data extraction XDS data reduction