GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5GOM designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5GOM_GDP_B_901 | 62% | 43% | 0.178 | 0.97 | 0.9 | 1.28 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5GOM_GDP_A_901 | 60% | 33% | 0.197 | 0.985 | 1.16 | 1.48 | 2 | 4 | 1 | 0 | 100% | 1 |
| 5GOE_GDP_A_901 | 93% | 51% | 0.075 | 0.968 | 0.91 | 0.99 | - | 2 | 0 | 0 | 100% | 1 |
| 5GNR_GDP_A_1000 | 77% | 45% | 0.13 | 0.969 | 0.94 | 1.16 | - | 3 | 1 | 0 | 100% | 1 |
| 5GNT_GDP_A_1000 | 75% | 42% | 0.14 | 0.975 | 0.99 | 1.24 | 2 | 3 | 1 | 0 | 100% | 1 |
| 5YEW_GDP_B_801 | 54% | 45% | 0.209 | 0.976 | 0.83 | 1.29 | 1 | 5 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 23% | 0.012 | 0.999 | 2.28 | 0.95 | 3 | 2 | 8 | 0 | 100% | 1 |
| 9BL0_GDP_A_201 | 100% | 46% | 0.016 | 0.998 | 0.96 | 1.11 | 1 | 2 | 1 | 0 | 100% | 1 |
| 8QEG_GDP_A_401 | 100% | 51% | 0.031 | 0.993 | 1.02 | 0.87 | 3 | 1 | 0 | 0 | 100% | 1 |
| 8QEH_GDP_A_405 | 100% | 55% | 0.03 | 0.993 | 0.89 | 0.85 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9BAJ_GDP_A_203 | 100% | 41% | 0.032 | 0.994 | 1.22 | 1.1 | 2 | 2 | 1 | 0 | 100% | 1 |
