GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5IGY designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5IGY_GDP_A_402 | 98% | 50% | 0.06 | 0.982 | 1.01 | 0.92 | 1 | 1 | 0 | 0 | 100% | 1 |
| 5IH1_GDP_A_401 | 98% | 58% | 0.055 | 0.977 | 0.84 | 0.77 | - | - | 0 | 0 | 100% | 1 |
| 5IGZ_GDP_A_401 | 96% | 51% | 0.079 | 0.986 | 0.67 | 1.2 | - | 3 | 0 | 0 | 100% | 1 |
| 5IGV_GDP_A_403 | 80% | 49% | 0.087 | 0.936 | 0.82 | 1.13 | - | 2 | 4 | 0 | 100% | 0.953 |
| 5IGW_GDP_A_401 | 73% | 46% | 0.111 | 0.937 | 1.05 | 1.04 | 2 | 3 | 0 | 0 | 100% | 0.94 |
| 5IH0_GDP_A_403 | 41% | 45% | 0.148 | 0.86 | 0.91 | 1.19 | - | 4 | 1 | 0 | 100% | 0.964 |
| 1TVK_GDP_B_1500 | 100% | 23% | 0.012 | 0.999 | 2.28 | 0.95 | 3 | 2 | 8 | 0 | 100% | 1 |
| 9BL0_GDP_A_201 | 100% | 46% | 0.016 | 0.998 | 0.96 | 1.11 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C3K_GDP_A_201 | 100% | 39% | 0.016 | 0.998 | 1.17 | 1.21 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C3L_GDP_A_201 | 100% | 49% | 0.021 | 0.997 | 0.91 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9C3N_GDP_A_202 | 100% | 38% | 0.017 | 0.998 | 1.36 | 1.06 | 3 | 1 | 0 | 0 | 100% | 1 |
